RNA id: XM_043238357.1


Basic Information

Item Value
RNA id XM_043238357.1
length 4913
RNA type mRNA
GC content 0.46
exon number 20
gene id stk36
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8271949 ~ 8282158 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atattaacgtatttttaaaaatgtacaattcaaAGTGCGTCATTTAATTTGTAGTAACTTTTGTTAGGGCTTCTATATGTGAGCCACCGCGTTGCTAGgcgctttttgtttttgttcgtCTGAACGGCGGCGCACGTCAAAGTTTCAGAAGTTTGTTGTGCGTTTACTATGTAATGTTAATCGCGTTGCTGTTCAGAGGCTAGCTGTTTTCGGTGAAAGTTACTTTAGCTAGTAGCATATCCAACTTTAGCTTCGTTAAATAGACGTTGTTTTGCGGCTCACATTAAGTCgatctctgaaaaaaaaaaaaaacatacactaGCTAGCTTTAGCCTACCTCGCTGTGCTTATATccttatattattaaattgcgAAACAAGCCATGGAGAGAAAATTGCCTAAATGATATACGTGCGTCTGTCCACTTTATACTGACTTATACTAGCTTTTTACCTAAAAGGACACCGGACTTTTCCTCCGGTTAAAGTTTCCTCTCTGAATGATGGATCAGTACCATATTTTGGAGGTTATCGGGGAAGGGTCATTCGGTCGAGTGTACAAAGGCCGCAGGAAGTTCAGCGGCCAGGTTGTGGCTCTGAAGTTCATTCCCAAAGTCGGCCGCTCAGAGAAGGACCTTCGCAGTTTGAAAAGAGAGATTGACATCATGAGGGGGCTTAAGCATCCCAACATAGTGCTGCTTTTAGACAGCTTTGAGACAGAGAGGGAGGTGGTGGTGGTGACTGAGTACGCAGAGGGTGAGCTGTTTCAGATCCTGGAGGATGATGGGAGTTTACCTGAGAATCAGGTGCGTGAAATAGCCTGCCAGCTTGTTTCTGCCCTGTATTATCTGCACTCCCATCGCATTTTGCACCGTGACATGAAACCACAAAACATCCTGCTGGGAAAAGGAGGAGTGGTAAAGCTCTGTGACTTTGGATTTGCTCGTGCCATGAGTGTGTCCACCTTGGTGTTGACCTCTATTAAGGGGACGCCTCTATACATGTCTCCGGAATTAGTGGAAGAGAAACCTTATGACCACTCAGCTGACCTTTGGTCTCTGGGATGCATCCTCTATGAGCTCCACACGGGGGCGCCTCCGTTCTACACCAACTCCATCTTTCAGCTGGTGCAGCTTATAGTGCGAGATCCAGTGAAATGGCCAGAGAACATGAGCCAAGACTGCTTGAGTTTTCTAAAGGGGTTGTTAATGAAAGACCCAGAGAGGAGGTTGTCATGGCCTGACCTGCTTCATCACCCTTTTGTTGCAGATGGAGTTTTGATGGTTTCAGATGAGCATTCAAGCAACCCCCTGACAGTTTCACCCAGCCCCGACCTACAGGCCCTGAAACACCAGCAGGCTGCTGAGAAAACAACGGCACGCAGCGGAGAGGGCAAATTACTGCGCAAAGCTAGAGAGCTTCGGGAGAAAGAGAAGATTAACAGACGGGAGACTGCGAGTGGAAGTGCTGCACGCGCCAGTCAGACACGCTGTAAGACAGCTTCTGCTGGAGGAGCCCCCACCACTGGCCACTCATTGGGCAGCACCTTTTCAGTGTATCAAAATTCATCTCAGCCAGCAACCAATCAGCATCAAGCAAATGACAACAGTGTTACCAGagtgCGGTCAGCTCCGCATAGAGGCCAGATAAGTCGAGACTACGAGAGGGAGTTCCCTTCGGTTGAGGTGGGACCCCGGCAGGTCCTGAAACGCCCTGGACACACACGGACCAGTCTGGCTTCTGTCAGGATGGACAGTGAGGAACAAGATATCGACAGTGATTCGGAGTGGCAACGATTGCTTGAATTACGTGATCAGGGCCCTGTAAACACCTCCATTCTTCAGAGGTTAAAGACCAAATTGCTTGTTACCAAAAACCAGCTATTGGCCATGAAGGGTGAAGAGGCCTCATTAATTCTCCAGCCACTAAAGATCCTCAGGAACATTGTTCAGAGCTGTCAGTCTGGTGATGTTGAAACGCTGGGAAAAGAATTGGAACTGCCTCATATACTGTTCAGGCTGATTGAAGACATCCTGAACATCCCAGATCTAATGCAGGAGTTTCAGGGTGAGACGGTATTGGGAGATCTGATGAATGTGCTCATAATGTACCTGGAAAAGAGCCCAGACTGGGAGATAAAGGGGAGAAGAGCTGAGGATCTCTGTCAGCTATTTATATCCGTATTTCTCTGTCGAGACCCAAAGCGCTCGGCGCTTTTGGCAACAGCAGTCTTAACCTTGTTCACTCGCCGCGGTATATCTGTGAATGTCAGTATGGAAAGGCTTACAGACTTTTTGGGGAATATTTTGACAGACACGGCAGAGGCGCATAACCCCTTACCTGCAGGTTGGGGCATGTGTGACGGCCTTCTGTCACTGATTCTCCACAGACTATCTGAGTGTGAAAGCAGCCTACTGCTCGACTTTAAGGACTCAGAGCTGTGGCTCTGCTTGTGGGTTCAAGTAAACGCCTCTCTGGAAAACACAACGTCCCAGAGTTCCCATTTCTCTCCTAACGGTCTGTATGTGTTCCTTTCTCTCGCTTTATTGGTTTTCTCCAGCGATCCGTATAACTGCATGGCTCTCCTGTCAGATAACTCCACAAAGTGCTGCTCTGCCCTCAGCCACCTTCTCACCACCAGTTGCGCTTTATTGCTTGAGCGCGATCTTTTCTGGGGTGACTCAGAAATAAACAGCCTATCAGTGATGAGCTGTCATCTTCTCTGCATCCCCTTCTCTCTGGAGTTACCCCtagaaaaacttttttctgTTCTCCAAACATATCAAAGCTCGAATATAATGGCCGGTCTGGTTAAGATGATTCAAACGCTTCCCGTTGGTCTGGTGGAGCTTCCGTTGTGTCTTCTGAATCGTCTGCTGGTATCTGACCCGCAGCACACTGCTCCATGCCTTATCACTACAGCCCAGGCCTCCGCTTTCCTCCCTTACAGCACAGAAGACTCAGACAATGGAGCAGACCACACTCAGAATCAGCTTAACCACTTCGGGAATGGTGTGGAGCGAATTAAGAGCAACGGAATCGCAAAGAAAGtcaaaatagataatatcaaaGGTGACTTCAAATCAAAGAAAAGGTTAGACAGGTTTAAAGGCAACACGGATGCATCTAAGGAAAAAAATGATTCCGTAAGGACACAATACCAGCCATCCAGAAACAAGATTGAGAAAATCAGAGAAGGCCAACCAAAACCCAAAATATATCCACAGAATACCATAAAACAACTAAGACATGAAATACAGCAGCAGAGCGGTTATATAGAGGAGATCATGGACAGTTTGGAGATGCATGGCAGTTCTGCAGGACACCTCCAAGACCTCTCACCTCAGCCAGGGTGCAGCATCAGCTGGCTTATAGACAGTCTGGAGGAATTAAGAAGTTGTGATCAACCAAAGATCTCCACGGCTAAAATTCGATCCTCACCAGAAGAGGTCAGAACAGCAGCTTCTCTGTTGGCTGTTCTGCTACAAAGTGAACTTCTCAGTGGGTGTGCAGTTGAACTCCTTATCCTTCTCTCCCAGCTAACCCGTTATCTCAACCATCAGTCCTCCTTCTTTTTTCCTGTCGAAACCACCCAACTGCGGTCTGCATTGCGCCACCGCGATGATGGAATCAGAGCGGCCTGCTGTGGCTTACTGGGCCACCTGGGCTCAGGTGTCAGGCAGGTCATTGGTGAATCAAAGTTAGACTTATTCCAAGATCTTTTAGGTTGCTTATGTGATCGTGCTCCGTCCGTTCGCAGGACAGCCTGCAAGGCGGTGGGAAACTGGTTGAGCGTAATGGGAAAAACCGATCTAACTCTTTCTTATAAAGATTTCAAGAATACGGGTGACGGTAATGCCTTGTCAGTACAAGACAAATTGAGGAGGACACCAGCAATGGATGGCGTCAGACATAGCGAGAGAGACGTATGGATAGAGCTCGCCATAGGAGCTGCCCGTCCCCTCGTGTCTCTGCTATCAGATGCTGATAATGTCGTTCGACAGCACTGCTGTGGGGCTTTGGCTAACCTGGCTGCGTTTGGCGGAGGGGATGGAGCACTTCTCAATACAGACGCTCCAGGCGTGATTCTCCAAACTGCCTGTAATGATTCTCATCATGCAGTGCGACGGGTGGCTGTGGCCACTCTGCGTGCGTTTAGCCAACAAAACACATTACTCCAGGCTCTGAGGTCTCTAGATGCAGGAAGAAAACTCAGTCGCACATCCCAAAGCTCTTTATTTCAGAGGGATTATCAATGGCTTGTCAGCAAGTTGGACGGGTCGGTTGAAGGAAAAACATGAACATCAGCCTCATAGtttgtgtgtcagagagaggaTGTAATGTCACATTATTCAAATATGGATTGCTGTGTCTGTGGCTGGAaaagctttctttttgtctgtgtttatttgatctgTGATCAAAAGAGTTTGACTACATATTCAGAGAAAATGGCAGAAACTCACAACATCCTCAAACAATAAACGTTATAGCTTGCGTACATTTAgatacatttcaaatgtaagCGTTTTTATTAGAATGTGTCCATTTTTTATCCCCACACGTAGCCTGTATTTAAAACGGTTAAGAttgagtttacttttttttctgtatataataacaaaaatgcaCTTGTATTTTTACGATGTGACTATTTTGAAGCCCTAATTGTTCGCATTTATTATTTCCTATTTCCTTTATATCAATTTAGCCCAgccccaaaaataaattatatctaACCTGTGtatcgagaaaaaaaaaaaacagcgacGTTTCCTAAAGGATATATTGCAATGGCGTAAAATGCAAGTCTTTAATGAGGATGGAAATGTGATATTCGGATGTCATcagtcacatttttatttagttgtttctaatcattaaataaatgaatgaacataaTTCCTTAAAAAA

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0035082 axoneme assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50577 lncRNA downstream 1301 8267093 ~ 8270648 (-) True G34332
TU50549 lncRNA downstream 9030 8255859 ~ 8262919 (-) True G34315
TU50548 lncRNA downstream 11820 8197468 ~ 8260129 (-) True G34314
TU50543 lncRNA downstream 53473 8216963 ~ 8218476 (-) True G34309
TU50544 lncRNA downstream 71867 8199230 ~ 8200082 (-) True G34310
TU50581 lncRNA upstream 7741 8289899 ~ 8290183 (-) True G34336
TU50637 lncRNA upstream 139364 8421522 ~ 8425502 (-) True G34374
TU50656 lncRNA upstream 178890 8461048 ~ 8462056 (-) True G34389
TU50659 lncRNA upstream 181215 8463373 ~ 8463603 (-) True G34392
TU50662 lncRNA upstream 182630 8464788 ~ 8465386 (-) True G34395
XM_043240350.1 mRNA downstream 61760 8203420 ~ 8210189 (-) True hmbsa
XM_043240352.1 mRNA downstream 61761 8203420 ~ 8210188 (-) False hmbsa
XM_043240351.1 mRNA downstream 62637 8203420 ~ 8209312 (-) False hmbsa
XM_043240349.1 mRNA downstream 62637 8203420 ~ 8209312 (-) False hmbsa
XM_043240285.1 mRNA downstream 96592 8171423 ~ 8175357 (-) True dpagt1
XM_043238627.1 mRNA upstream 234 8282392 ~ 8287689 (-) True c5h11orf53
XM_043239799.1 mRNA upstream 87414 8369572 ~ 8386394 (-) True adamts15a
XM_043240774.1 mRNA upstream 148433 8430591 ~ 8431586 (-) False timm8b
XM_043239106.1 mRNA upstream 229444 8511602 ~ 8537027 (-) True ubash3ba
XM_043239108.1 mRNA upstream 255534 8537692 ~ 8543385 (-) True f11r.1
TU50440 other downstream 550486 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 874796 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1149485 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1150100 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1328746 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 129724 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 147542 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 392391 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 647312 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 933350 9215508 ~ 9220507 (-) False vamp5

Expression Profile