RNA id: XM_043238359.1


Basic Information

Item Value
RNA id XM_043238359.1
length 1797
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC122344788
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27168265 ~ 27172894 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGAAAGGACTTTGGAAGCAAACTCTGCCCGGAGCAGCACCATGCTTTCGATGTCATTACTGAATGCCTTGGACGTCGAGAGCTGTTTAGGACTTCTTCTCGTATCCTTACTAATTTTCGATTTTTGGAAAAGTAAGAATGCGCCGAACTTTCCGCCAGGACCGTGGAGTTTTCCGTTTCTTGGCAACGTTTTCGCCGGTTTCGACTGTCGCGCGATGGACGAGGTGGCTGCAAAGTTTGGCAACATTTGCAGCCTAAGAGTGGGTTATGACAAGATAGTGCTGGTGTCTGGATACGAGAGGGTGAAGGAGGTTTTGGAGACACAAGGGGACTACTTTCTGGACCGGGTCAGATCTCTTCCTTTTAAACAAGTAGTTCAAGGAAATGGCATTTCCCTGAGCAGTGGATACAAGTGGAGGAAGCAGCGCCATTTTACTTCCTTTCACCTGAAGGCCTTTGCAGAGGGCAAAAATGCTTTGGAGCGTCACGTTCAACAAGAATGCATCTATCTGTGTCAGAGCATTGAAGAAGAGCAAGGAAGCCCCTTCAACCCTCATGACATCCTAAACAATGCCACTGTTAATGTAATTGGATGCTTTGCGTTTGGGAAACTTTCTGATGACGGCTTCGTTGACTTCAGGAACCTGCTTGTCAATTCAGACTCCATGTTCATAGAAAATATTCCACAAATTCAGttttacaatGCATTTCCTGGGATTGTCAAACGTTTCTATGGACCACATAAGACGGCTTTATTAAACTATGCAAAGCTATCAGCCTTCATTAAGAAACAAATTGAGAAACATAAGAAGGACTGGGACCCTTTCGATCATCGTGATTTCATAGATGCCTACATTGGAGAGATAGATaagAGACGGAAGGATACAGAGGCTGCTTTCACTGGGGAGAACCTTGCCTGTATCACTGTGGACCTTCTCAAGACTGGGACACAAACCATGACTGATACCTTACGATGGGCTTTACTTCTAATGACCAAGTACCCTGATGTCCAAAAGAAAGTTCAAGATGAAATCGACTGTGTAATCGGCAAGTGGCGGCAGCCATGTTTGGTAGACAGAGTCAAAATGCCTTACACAGATGCAGTTCTTCATGAAACTCAGAGAGTGAGCAACATCTTCCCTCTGACTGCACCGCGTCTGACGAGTCGAGACTCAGTACTGGCTGGATACTTCATTCCTCAAGGCACACTGGTCATCTGTCATCTGTCCTCTGTGCTGAAGGATCCATCACAATGGGAAAAACCAGATCAGTTTTATCCCGAACACTTTCTAGATGACCGAAGGAATTTTAGGAAACGggatgcattttatgcattttctgCAGGGAAAAGGTCATGTTTGGGTGAGCAGCTCGCACGAAATACACTCTTCCTGTTCTTCACTTCCCTCCTCCAGAGGTTCTCGTTCTCAGCTCCTGAAGGATTAGGACCTCACTGTAAGGACCAGGAACAGATCAAGATGTCTCAAGAATCCTCCCAGATCTTTGTGTCATTACGTCAAGAGAAACGGGAATCAGATCTGAACTGATACTGAGTTCTATTAATAGATAGATGTTATGTTAATACATGAAGTAAAATGCAGTCTTTTTGATTCTGTTCAATAAGAAAAGATTTATTCCACAGCGATAAAGCATATGCAAGGACATGTgcattatgaatgtaatttttgtaaaaatgtttagattgtaaaatgttaatacaattcaaatgtgaaaattatgctGTATATTGTAGCATGTAATTGATATAAAATCTACTTATTCCCATAAATcattcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250928.1 lncRNA downstream 21303 27115967 ~ 27146962 (-) True LOC122344810
XR_006250929.1 lncRNA downstream 21303 27129247 ~ 27146962 (-) False LOC122344810
TU58817 lncRNA downstream 25607 27140795 ~ 27142658 (-) False LOC122344808
XR_006250926.1 lncRNA downstream 25665 27140415 ~ 27142600 (-) True LOC122344808
XR_006250927.1 lncRNA downstream 39809 27127129 ~ 27128456 (-) True LOC122344809
TU59004 lncRNA upstream 15956 27188850 ~ 27189222 (-) True G39857
TU59020 lncRNA upstream 51993 27224887 ~ 27225562 (-) True G39870
TU59023 lncRNA upstream 59764 27232658 ~ 27234162 (-) True G39872
TU59040 lncRNA upstream 92395 27265289 ~ 27267229 (-) True G39888
TU59046 lncRNA upstream 112288 27285182 ~ 27286194 (-) True G39893
XM_043239545.1 mRNA downstream 60886 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 60888 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 68546 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 153767 27001647 ~ 27014498 (-) True LOC122345427
XM_043239543.1 mRNA downstream 167005 26997549 ~ 27001260 (-) True LOC122345425
XM_043238698.1 mRNA upstream 104153 27277047 ~ 27280391 (-) True spaw
XM_043238696.1 mRNA upstream 115278 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 129365 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 139995 27312889 ~ 27334798 (-) True inpp5jb
XM_043238855.1 mRNA upstream 170596 27343490 ~ 27389998 (-) True smtnb
unassigned_transcript_1081 other downstream 1056863 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1058695 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1066856 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1076269 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1078477 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 210027 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 716229 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1082934 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2287691 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2444105 29616999 ~ 29655061 (-) False eng

Expression Profile