RNA id: XM_043238366.1


Basic Information

Item Value
RNA id XM_043238366.1
length 1862
RNA type mRNA
GC content 0.45
exon number 5
gene id cdca5
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26816920 ~ 26820637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGGTTTAGCTCCACCCCTGCATCCGCCATTTCCTGCTACTGCATGGGAAGGCGGGCGAATTTGAAAGAAGAGCGTATACGTTTCCGTCTGAATgacataattatttgtattacttGGTTTATACAAATCAACACAAGCGAATATATAACGGATTGGACAGTGTAAGTAAAACGAAGACCCAGCTCTTTTAGCATACATGCTCCGTTAGTTTGTCGTGTGTTCGTCGTGTTAGCTTCATCTCCCGTCCAGCGGCTGTTCACAGATTCTGGATCTATTCCCTTCAAGATGAGCAACAAAAGCACACGGTCACTGTCGAGGAGAAGCAGCGATGAAGTCAGAAAGTCAAGTGGAAAGAGTCCACCGCGAAGGAGGTCCTGCAGGCTGTCTGCAAATGACCAAAGCCTGGCCTCGAGAGTTCTGGCTCCACCTGTGGTTGTGAAGCGGTCAATCACTGTTAGGAAAATTGCACCCAGGAAAACTCAGGCCCTGTCTGACAGTAACAAGGAGAATGTAGAAAGATTATCTGAAGTGCCGAAAAAGCTGTCTCGAGTCTTGACATCGTCTCCAGCTGTAGTGACAATACCCAAGACGTCTGTGCTCTCGCCCATCCTGCCTCCTTCATCTCCATCCGCTGAGCCCAAAGAATCGGAGCAGGACCCCGTTTGGTCCCAAAAAGTACGACGCTCTTACAGTCGCTTGAGTATAGGGGACAAGTCCTTTGAAAGCCCCAAATCCCATCCTGCGCCTTCCACTTCTCCCAACAACCGAGAGACCCTGTTTGGTTTTGAGAGGCTTCAGACTCCAGAGGTGATGCGTAAAGCTGAGGGATCTAGAGCAGCTCCTCTGGGCTCTATGTCCGTCTCGCTGGGTTCTTTCAACGTTTCCGCTGCTGATGAAAGCGCGTCAAACCCCCTGGAAATTGATCTAAACATCCCAGGTGTGTGTCTGGGGAAGAAGACGAGCAGGCGGAAGCGCGTGCAACAGATAAAGATGTCAGAGTTGGACGTTCTTGCTGCAAAGATGAATGCTGAGTTTGAGGAAGCTGAAAGTTTTGACCTGGTTGTTGAATgatccccacacacacacacacacacacacacacacacacacacacgcaggacACTTTCAGGACGTGGGATACTTTCCAACTCATCACTTTTGtaattgttcatttcttttctctgtttcctCCTGCAAAATCTTAACTAAAAGCATGCTTTAAGAGATCAGTTTTGTTGTTCTGATCATTTTTCACAGTGCCACAATCATCAGTAAATCCCTGAATGACAAGGTTTTTATTCCTTGTTTATATTTTCGTATTTGTTGAATGGGTTTTGTTAActcttgttattttaataaatagcatTTGCGGTAGTGGCCTGTCAGAGTTGAAAGTGAATCCTGttgttaaaagtatttttttctaggATTAAATGGCGGCAGACAGGAAGATCACTGTTACAATATGTAATTCTCCacctttttatattcataaattcTGTCTGCCTAGGTCTTTTTAGCTTAGTTGAGCTTTAGTTCTTTTAAGTGGGAAGTGAGCTCAGTATGTAGAGCAAGCGTCGCTGCATGACGTGATTATACTGTGCTTCACCACTAGAGTGAGCACTTGATTATCACAGTACTCCTAAGTGCATCTATTGTTTACTCTGTTCCAACATGGTTCCTGAACGTTTTTTGTGGTATGCGGTGTGTTCAGCATGTCAATgtcaatccatccatcaataATCTAACAGAACCTGAGTGCAGTGCATGCCGAGGCGTCTGAGAggcctgctgcagctgatctgAGCTTTGCTGCTCTccatatttctaaaataaataaatgcattttgcctTATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 443098 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 663217 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 697837 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 1033329 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 1088450 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 55953 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 55953 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 261364 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 279178 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 295330 27115967 ~ 27146962 (-) True LOC122344810
XM_043238941.1 mRNA downstream 6983 26802384 ~ 26809937 (-) True si:dkey-273o13.3
XM_043238940.1 mRNA downstream 16874 26796255 ~ 26800046 (-) True rom1a
XM_043239284.1 mRNA downstream 27902 26769931 ~ 26789018 (-) False rps6ka4
XM_043239158.1 mRNA upstream 661 26821298 ~ 26851848 (-) False clip1a
XM_043239159.1 mRNA upstream 661 26821298 ~ 26851848 (-) False clip1a
XM_043239156.1 mRNA upstream 661 26821298 ~ 26851848 (-) False clip1a
XM_043239155.1 mRNA upstream 661 26821298 ~ 26851847 (-) False clip1a
XM_043239157.1 mRNA upstream 661 26821298 ~ 26851847 (-) False clip1a
unassigned_transcript_1081 other downstream 705518 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 707350 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 715511 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 724924 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 727132 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 562284 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1068486 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1435191 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2639948 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2796362 29616999 ~ 29655061 (-) False eng

Expression Profile