RNA id: XM_043238381.1


Basic Information

Item Value
RNA id XM_043238381.1
length 1199
RNA type mRNA
GC content 0.37
exon number 5
gene id si:ch211-271e10.2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14283080 ~ 14287440 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTTAGCAGACGTAGCCTACAACGTGATGTCttgtcattgtattttttttagacgAAAGTGAAAGTTAAGCTTGCAGCAGTCTCTCAGTGACTCgtgattttttaatttctcgCAGCAGTctcagaacaaaaacaaacaGATAAACAATGAGTAATGTTGCGAAGAACTTGAAGGATTCTCTCAAGAAGTTTGGCTTGAAGGAGGTCTCATCTCCTGAGGGATGCCATTTCTTCCTGTTTTTCTGCCCCATTACTTCCCGCGCCGGAACTGACATTGAAGCTGCAGAGATTTACCTTAATGAAGTCAATAAAGCTCCCAAACCAGTCATCATGGTGGTGCTCCATTACACGTTTGACCCTGAGAAAATTATACTGGACAGCAACAGTGCTATAAAGAGAGAGGACATATTTGCTGTGGACTGTCTGTACAATGACACGGGGTTACTGGCATGTGAGAAGAATACGGAGGCGATTAGTAAAATTCAAGTGgattcaaaattaaatAGGTGGACTTCATATTACTGCTTAAAAAatcATGGAAATCCTTGTCTGCCCATAAACCTGGATGCAAATGATAAGGGATTTAATTGTCCCATATTATAGATCAGTGGTTCTGCTTTGGAATACATTTATTGTTGCCATTGTTCTTCTGACTAATTACGATTATTTGCCTGTTATTcgcaacaaaaaaatgatatttcaattttttggaGTAGTAATATAAGTGTAGTAATATACCACAtgaagataatataatataaataactaacAATTGCTTGATCAGCGATATGTGTATGAAAAAGTGTCTAGTATGAAGCAAATGTAGCCACTACAATTAAGTGTTCtgtgaaaaaagtttttaaacccAAGCACTCAAATATTTGCATGCCAGTCAAACAATGGTTTTtgcaaaactgatttaaatagCTGCTCAACTTGCTCCTGACCATTTTTTCCGTGTTTCCCAACCACCCCAACCTGATTCATTCTTTCCGTATAGGAAAACACAAACCAAACCAGTTCACCGGATTAGCTTTATACTCATACGCACACGCAAAAGGTAATTTTAATCAACACATAacagtgtgtaaaaaaaaaaaaaaaaaacgcacaaaCAATATTTGCAAGAAAAGAGGAACTTAAAACACAGGACAGCTAACAAGATAATGAAACTCTAGGAAGGAAGTTTGCTAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53675 lncRNA upstream 235586 14046777 ~ 14047494 (+) True G36420
TU53657 lncRNA upstream 275678 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 279549 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 282743 13999100 ~ 14000337 (+) True G36405
TU53521 lncRNA upstream 308321 13974532 ~ 13974759 (+) True G36332
TU53795 lncRNA downstream 34116 14321556 ~ 14322681 (+) False G36503
TU53796 lncRNA downstream 36911 14324351 ~ 14326754 (+) True G36503
TU53787 lncRNA downstream 45628 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 45628 14333068 ~ 14337765 (+) True LOC122345214
TU53801 lncRNA downstream 54483 14341923 ~ 14342507 (+) True G36507
XM_043238374.1 mRNA upstream 2791 14276095 ~ 14280289 (+) False mogat3b
XM_043238375.1 mRNA upstream 2791 14276096 ~ 14280289 (+) False mogat3b
XM_043238373.1 mRNA upstream 2791 14276615 ~ 14280289 (+) True mogat3b
XM_043238376.1 mRNA upstream 57084 14221600 ~ 14225996 (+) True gltpd2b
XM_043240389.1 mRNA upstream 126546 14145969 ~ 14156534 (+) True gnb2
XM_043238978.1 mRNA downstream 15304 14302744 ~ 14305304 (+) False LOC122345142
XM_043238976.1 mRNA downstream 15382 14302822 ~ 14305304 (+) False LOC122345142
XM_043238977.1 mRNA downstream 15382 14302822 ~ 14305304 (+) False LOC122345142
XM_043238981.1 mRNA downstream 19397 14306837 ~ 14310076 (+) True LOC122345145
XM_043238979.1 mRNA downstream 24204 14311644 ~ 14314601 (+) True LOC122345143
TU53623 other upstream 297374 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1475864 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1577839 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1766972 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52594 other upstream 2027408 12249138 ~ 12255672 (+) False G35720
TU53776 other downstream 2980 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 12603 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 12603 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 360049 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 431092 14718532 ~ 14720487 (+) True G36640

Expression Profile