RNA id: XM_043238392.1


Basic Information

Item Value
RNA id XM_043238392.1
length 2879
RNA type mRNA
GC content 0.46
exon number 2
gene id zbtb43
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31859896 ~ 31864890 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGACTGTGCGTGATGACGTAAGCTGTACGCAGCGCTCTGGCTCTCGGAAGAGAGGAGGCGAGTTAGCTTTCAGAAAACCGGActaaaatgatgcaaaaaacgAGCGTGTAGATTCCGCGTAACCATGGAGACCGACGCTAACTCCTTCCACGTGGAGTTCCCGGATTTTTCCTGCTCGCTCCTGAAGAAGCTGAACCAGCAGCGGCAGAGAGGGCAGCTGTGCGACCTCATCGTGTCCATCGGGGGCCATCAGTTTCGCGCCCACCGCGCCGTCCTGGCCGCCAGCTCTCCGTACTTCTGCGATCAGGTGCTGCTGAAGAACAGCGCCCGCGTGGTGTTGCCGGACGTCATGCATCCTTGCGTTTTCGAGGCGCTGCTGTTGTCGTGCTACACCGGAGGGCTTTCGGTGCCAAGCGGAGAGGTGGTTTCCTTCTTAACGGCGGCTAGCTTCCTGCAGATGTGGCACGTGGTGGACAAATGCACTGAGCTCCTGGAAGTAGGAAAGAAAAACCGGATCGACCacggatcgtctcctaaaggtGATGGTTACGCCACCGATAATGAAGACGCCGGTCACGCCGCGGGAGAAGATCTAGGCGATTTAGATCCTGCTTTAGGTCCAGGGGCGCTAGAGAGCGGCGGTTGTTCGTCTCCGGATGATCCGAGCAGCGAAAACGGCTCGGATGCAATGGAGAACCAGTGCTCTAAACCGGCCTACGTACCGCCGAGCATCATGGGACACAGAAAGAAGGTGCATATAAAATCGGAAAGGCAGAATCGAGACGCCTGCGGCGGCTTGTTCGGCGCCGAACACGGAGCGAACGACTCGGACGAGAACTCCCACAACCCGAACGCGGCAGAGGACTGTTTCGACGAGAAACTGGCGGAGTGCTTGGATCGGGATTGCTCTTACGAAGAGCCGCTGGACTTCTACGGGACCTCCATGGAGGGCTTTTCGCAAGCCTCGGACGAGCTTTCCAACCCGACCTCCAAGCTCGAAGGCGGCGCCGACGTTTCTAAAGAGGAGACGCCGGGCGACGGCGACGGCGGCGGCTTGAAGGAGCAGACCTCGCACTCGGGCTTCGCTTCGGTGGTCTACAAGCTCTACCCGTGCCAGTGTGGCAAAAGTTTCACGCACAAAAGCCAGAGAGACCGGCACATGAGCATGCATCTGGGTCTGAGGCCGTTCGGTTGCGCCGTTTGCGGCAAGAGCTTCAAAATGAAGCATCACCTGGTGGGCCACATGAAGATCCACACGGGCATTAAGCCTTACGAGTGCAGCCTGTGCTCCAAACGCTTCATGTGGAGAGACAGCTTCAACCGACATACCTCCACGTGTGCGAAGGCCCATCAGAACCGGCGGGCCTCTCAGATCTGCTAGTGCTCCCGCGGGAACGTTCGAGGAACCTCAGCACGGAAGCATCCTTTACCTGAATGCCAAACTAGCCGCTGCACACAGTAGGGTTATTTCAAACAAGCACCTCAATTGGGAACGGAGGCCTTCTGTTCGGTTCGTTCAGGTGTAAAGTATCGGTCAAGAGTTGGGAATAATTACGCCGTTCTCGTGCTCAACAAGGCTGTGTCTATTTATCGAAAAACGGTACAAGCgtgaaaaattattacaatgtaaaatgtgattttaaagctgaaatttcCAGCGTTCGGCGTCACGTGacccttcggaaatcattctgatataccgatctgctgctcaagaaacatttctgattattatccgTGTTGAAAACGTGTGCAACTGTATACGTTTGCAAAGATGAATATGTTACTATTAAGAAAGGTTAAcggtatgaatacttttattcaacaaggatgcattaatcTATTCAAAAGTGATGTTTAGAAtgagatttctattttaaaaattatttgaaattactGTTCATTGAAGagtttggggggaaaaaatgcaatatagtttccacaaaaattctatattatatttacaacattaattaattaacaataccattttaataaatgagcgccataataatttacaagaattgagcagaaaatcagcaaatgtttttgaaggatCGCCTGGAGTAATAATGATTTGCATTataagaatacatttatttctttttttttacattacagtagTTAACAGTATTAAAATTTCAATgctatttcataattttttataatgtatttttaatttaataataataatacagccttggtgagcagaagatacatagtcaacataaaaaaaacccgTATATAATTTCAAACTTTTGACCGATCTTCGATCTACTCACAGAATGATTTAAAGTCAACACGTCACGGACTTTAGATGTTAGCAGATGTTGAAGTAAAATGCCATCTCATGTTGACTTCGGGGTCGTTCTGATGTCTCAGAATGATATCTGAAGGAAAACTATGACCACTTTCTACACAAGAGCCTTGAATGCTGTCATAATATTCAGGTTTAAAGACTCACTAAGCGCTTTGGAGTTTTAACAAGGTTTATCTTctgtaaatagaaatattccCAGATGCAGCATTACGCTGGATTTCGTTTGCTTTAGTTGAGCTGGATTCGGTGTTTGGCGTCAACTCTATTGCCGATCTCTGTAACCGGAGCGTTTCCGATAGGATTTCTCAGAGAACAGCGCTTGTTTCAGCTGCTAATCTGCTCTAATCCATTTTATGCTCTAAAAGTCAACAGATTTATTAGGAGGATtttgaagggggaaaaaagtcaaataaaatcttACATAATGCTGCATTAATGGCATTGACATTTTCATCTCCTTCTGCAGTGTTCTTGTATGTGATGTTcattttgtcaaaatgtttctataatgtgccataattgtaaaatattagaaatgtcATCTCTATATGGGCGAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10514 ZBTB43; zinc finger and BTB domain-containing protein 43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60793 lncRNA downstream 61628 31797709 ~ 31798268 (-) True G41051
TU60772 lncRNA downstream 127637 31712351 ~ 31732259 (-) True G41037
TU60771 lncRNA downstream 127637 31730532 ~ 31732259 (-) False G41037
TU60730 lncRNA downstream 164108 31691866 ~ 31695788 (-) False G41018
TU60811 lncRNA upstream 111046 31975936 ~ 31977051 (-) True G41064
TU60812 lncRNA upstream 112824 31977714 ~ 31978466 (-) True G41065
TU60963 lncRNA upstream 521237 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 573729 32438619 ~ 32439145 (-) True G41198
TU60982 lncRNA upstream 579392 32444282 ~ 32445281 (-) True G41191
XM_043239997.1 mRNA downstream 2294 31759936 ~ 31857602 (-) True LOC122345662
XM_043238572.1 mRNA downstream 123945 31733458 ~ 31735951 (-) True zgc:153704
XM_043239558.1 mRNA downstream 148159 31702453 ~ 31711737 (-) False apooa
XM_043239559.1 mRNA downstream 148162 31702453 ~ 31711734 (-) False apooa
XM_043239010.1 mRNA downstream 176316 31674315 ~ 31683580 (-) False srrt
XM_043239757.1 mRNA upstream 30913 31895803 ~ 31934473 (-) True lmx1ba
XM_043239754.1 mRNA upstream 78965 31943855 ~ 31960848 (-) True mvb12ba
XM_043239755.1 mRNA upstream 78965 31943855 ~ 31960846 (-) False mvb12ba
XM_043239756.1 mRNA upstream 78965 31943855 ~ 31956160 (-) False mvb12ba
XM_043238302.1 mRNA upstream 114997 31979887 ~ 32016468 (-) True pbx3a
TU60769 other downstream 136990 31721270 ~ 31722906 (-) True G41035
XR_006251005.1 other downstream 148159 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 1033538 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 1033538 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 1067177 30789633 ~ 30792719 (-) True G40713
XR_006251008.1 other upstream 257394 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 349386 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 349402 32214292 ~ 32293782 (-) False LOC122346090
XR_006251087.1 other upstream 349403 32214293 ~ 32293782 (-) True LOC122346090
XR_006251089.1 other upstream 349405 32214295 ~ 32293782 (-) False LOC122346090

Expression Profile