RNA id: XM_043238398.1


Basic Information

Item Value
RNA id XM_043238398.1
length 3815
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122344823
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21877081 ~ 21884022 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTGTGATGTTTACAAGGTGTACCTGAATCTGATCTAAAGACGCCTCACCACAGATCGGGAAAACTCTGCTCCAAACATCCTGCTCTGGTATTTTCATTATAGTGTCTGCTTTTTGAAGACGGCCACAAAATGAGttTTGAAGGTGCCATAAAATCTAAACTGCTTCTGCTGGAGTGTCATTTTACTTGGTCTCTACGAGAAGAGGATGACTTTGATCTTTGTGATATACTGAACCGTCTGGAGGAACAGATTCAGCTGGAATGTAAAGAGGCGAGGGTAACTCGAGCTTACAGCAGTCTTGGATTTGTTCATTATCTCCATGGCAACCAGCAGCAAGCACTCGCATATCTGCAGAAATCAGTGGAGCTTGCAAAAGAACATTACAAAGACAGCGATGAAGTTCTTATTGTTACCTATGGAGACCTTGCCTGGTTGCACTATCATATAAAGGAGTTCTCTAAATGTGAAGACTACTTCAGAGAGTTAGAGAGGATCAGCAAGAAACATTTTGGGGGATTCACTTACACTGTCGAGGTTCTCAGAGAAAAGGGTTGGGCATTTCTTAAATTCTCTGACAAATACTCACATGCCGCAAAGGAATGTTTTCGACAGGCCCTTGAAATGAACCCGGGTGACAGTGATTTAAATTCAGGCTATGCAATTGCATTGTACCGCACAACAAAAGGCTCTGACTCTTCAGGCTCAATAACGATAAACCAGCTTGAAAGAGCGATAGAACTTAATCCAGACGATGCTGTTCTACCACTGTTGTTAGCCTTAAGAATGCTGAAAAACAGAGACGATAAGACATTTGAACCTGTGCTGAAGAACGTGACCGTAGCGCTGAGGATGTCCCCTGAGAACCCACACGTCATAAGATACACAGCAAATTTTTTCCGCCAATTAGGAAACATGGACATTGCCATTAATCTACTGGAAGGTGCCTTGCAGGCTACCCCAAACTCTGCTTTTATACACCATCAATTGGCTATGTGctacaaaaagaagaaaacatacCTGGAAAAGAAACACAAGACACAAGGAAAAGCAAAGTTTAATAGTAAAGAGTcagatgaaataaagaaataccgGGATCAGTGCATCTATCATCTGGAAAAGGCGGTTTTACTAAAGCCATCTTTTGTGATCGCTGTGGCAGATTTAGCACTGCATCATGGACAACTTGACAGCTGCAAAGGTGACAAActttttgaaaaagcatttaaactggcttataatgaaaagaaacatcTGCAGTCGGTTCATTGTTCATGTGGCCATCACCAGCTGTACTGCAAAAGATCGGAGCAACTGGCCTTCCACCATTTCATGCAAGGTCTGAGTCTGCAACCAGAGTCAGAGCAAGGCAAGTTGTGTGAGGACAAACTTAAAGCCATGATGCAACATCGTGTTAAACGGCTGAACAGCCCGGATGACGGCATGGTGTGTGGCATACAGGGATTCATTCATGAAGTAAAGGGTGAAAAACTCAAGGCTGAGGAGTTTTATGAGAGAGCCCTAAAACATGGGTTTGATTTTGGTGAACTGTTCACAGAGATAAGAATTTGGCTCATGAGTTTCGGTGAAGCAGACAAATCTGTTCTAAGCCTGATTTTTGATGGAGGAAGTTACAAAGTTGAAAGTGGGAGGATTGTGACTTTCAAAGGTGCAATGAACAAGAAGATTGTGCACTTAGTTAATATTGATATCTGCAATGCCAAGATGATTCTTCGATGGGAAAAAAGGAGTCCTGGGCCTCATGCTGTTCTTCTTGCCTTAACTCAACATGATGGGACATTCACAGACCAAACCAAAGAGATTCTTGAAAACTTGGAGTTTCTTGGAGAGAAATTCTGGAATCATGTCATCGTATTATGTAGCTGTAACGCAGATGCCACGGTAGCTCAGAGAAGCGAATTGGAGTGTATTCAGTCACGTCGGCAAAAACCAATCAACTACTACATCTGTGGCTTTGCACCAGAATCTACACAGAGGAAGGAGCTTTCAGACAGAATACAGATGATGATCAGGAAAAATAATTCCATGCATCTGGTAGTACCCGACATTTCTGACAGAGATTATCAATCCCCTTTAGGCATCGGAAGAAGGCTAGATCTGAAAGATTATCCGTTCACTCCCGAGGTCCTCTTTCAAGAGGGGCAAAGGAAATACAGGTTACAGTGCAGCCATGCAGGCTGGTTCCATTGTAAGTTTACACGGATTGGTTTTAACATGGAGGGGGAAGGAGAGGTGCTGTATAGCACTGATCTTCAGAACGATGACTGTCCAGTCCCTGCCAACTATTACCAGGCAGGACCCGTGTATGACCTCAAACGTGTGCAGGGTGAGCTGTCTCAACTCAGTCTACCTCACTGTGAGACCTCCATTGagGATGCCTGCCACTTCATGTCAGTTACACATTGTTCTAATCAGATAGTTGATATCCTGAAGCCTCAAAATGTCACAAGCACACATGTCACAGCGAGCATCAAAGAAACCTCAAAGttttttattgccaaaaaagaaaactggTTCACTGGTCATTGGTCTAAGATGCTTGGCCAAGTGATGCTATTCTACTTAAAGCCAGCACATAGATTGCATGTGTTTCTTCAACCAGGCAGTGTGGACCCTAGAGAAgtGGAAACATTCAATAAAGATTACACATTAATCCAAACAGCTGAATGCATGCttaaatatgaatgtgtgtacAGCATGCTATGTGATCCTGTTGAGAAACACGGTCTTTCAGAGATGCCAAAGATACAACCAATGGACATAAAGCTTCATTGCACGAAGCAGTGGAAACATTACTATCCAACATTTGATATAAAGTTGCCAGATGGTGTGATGAAGGTGGGTTTACATCTCAAAAAGGAAAACCCCAGGGAAGGAAGGGTTGAAGTTGTATGGAGCTGTGACCTATCACTGACAGACTATACAGCAGAACGCAGCAGACCGAGCCTATGAACAGATGAATGGTGTGAGCATGTGacttaaaaactaaatcttatacattttatttacgtTTGAATCACCTTGTAGCTTGTTAGTTGCAGTGGGGAAAATGATTAGCttctgttttttaatgtattgtataaattaaatgcGTTGATGACTGTAGGTGTTTTctttatgaaaaataacaaagctGAACTCATctaaaaaatgagaaatgttaatgtcattttttatcaCCTTGATGACATTAATGCAAACTGgtaaataaaatcacatagATATAGAATATGATATAGAAtggtatttatttgttattttcaaaatCTTGCTACAATACTGTATGTCAAAGCGTGTGATACTGACCACTGTACCTTAcagtcttttaatattttttgagatGTACTGCTACTGCTAGTGAAAAGTGAAATTTGGATTGTGATTCATTGGGTTTGTCCAAGTTATGATTAACTGTAAGGTAAATAACATAGATAGAGGtgacagaatatattttatttcctatTTCACCTCAATAAAGAGGTGCTGTATTatcttaaaattattaatatagttaATTCAAATGTATGTTGAGTTTAGAGTAATAATGTGtaaactgttgtgtttttttttggttcagtcTTTAACTAGCCATGAAACTATTTGatgttataatattaacaatgcagattctTATGATacaatgtttaattcaatttttttaaatatggtttaccactttaaattttaattgtttaggcTATCTGTAGTTGCCTATGTGGATGTTGGTTGAGCTTGTTCTCAGTCTACTATTGTCTACTAAGGTTTGAATGTGAATAAAAcggcaacaaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 496 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 9620 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 36981 21836313 ~ 21840100 (-) True LOC122345027
TU56981 lncRNA downstream 37408 21839359 ~ 21839673 (-) True G38515
XR_006250964.1 lncRNA downstream 39476 21836313 ~ 21837605 (-) False LOC122345027
TU57036 lncRNA upstream 124864 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 154338 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 154338 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 154358 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 154358 22038380 ~ 22041219 (-) False LOC122344815
XM_043240559.1 mRNA downstream 10042 21856983 ~ 21867039 (-) False sympk
XM_043240555.1 mRNA downstream 10042 21856983 ~ 21867039 (-) False sympk
XM_043240556.1 mRNA downstream 10042 21856983 ~ 21867039 (-) True sympk
XM_043240558.1 mRNA downstream 10234 21856983 ~ 21866847 (-) False sympk
XM_043238738.1 mRNA downstream 20538 21852579 ~ 21856543 (-) False rsph4a
XM_043238785.1 mRNA upstream 1985 21886007 ~ 21896079 (-) True hnrnpul1l
XM_043238786.1 mRNA upstream 1985 21886007 ~ 21896028 (-) False hnrnpul1l
XM_043238440.1 mRNA upstream 25752 21909774 ~ 21922073 (-) True LOC122344852
XM_043239243.1 mRNA upstream 41476 21925498 ~ 21953026 (-) False ap2b1
XM_043239242.1 mRNA upstream 41476 21925498 ~ 21953026 (-) True ap2b1
XR_006251046.1 other downstream 50976 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 257498 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 508033 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 940988 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1749691 20125589 ~ 20127390 (-) True G38140
XR_006251116.1 other upstream 75763 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 155879 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1718222 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1867858 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 2003281 23887303 ~ 23887680 (-) True G38973

Expression Profile