RNA id: XM_043238401.1


Basic Information

Item Value
RNA id XM_043238401.1
length 2726
RNA type mRNA
GC content 0.44
exon number 6
gene id upk3b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22826309 ~ 22831734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acccgTCCTAATTCTCTCCACCCTGTATTACCACTTGGCAAATACTGTTAATAGCCCTGCTTCATAGTCTGATTCAACACAATGGGATTCGGGATATAGTTTTACGTCTACGTCATCGTTTCAACTCGCCTGTCCAGTCTTCACAAATAAGACGCTTTCTGAGTTCTACACGGACACGTTTAGAGAGAAAACGACAGTGACTTTTACCTATAAACAACGGTTCATTCGCTTCGTGTCAAAGCAGGTCTGGTTAGGCCGGTTTTACCGACAAACAAATTTGATTACGAGCACTTCAGAGAGTTGCCGGAGTTGCAAAACATACAGCCCGGTTTGTCCTTGAAGACCAATATGACAGCGGGAAACGTTTTGGCGCGCTGCGCAACACACTCAGAAACTCTTGGGAATCGAGTATTCTTGACGTGTTTTGTGAATGAACTCCACACCTCTGCCCTTTCACGTCATGTGCCTGTTTGGTGGGAATGAAGCCTGCACTGCGCCGAGGGTTTGTTGACTTTCACATTACTCATTCAGACAGACGTCTGCTTTATCTTCCGTCTCGAGCGTCGCACGTGGCGGCTCCGTCCACCTGAACGGCGACGAAAACGTGTTCTGCGCTGCGAGATTAAAGCGTTTTATCATGATTCAAGCATTTCTCAAAGCTTACAAAATAGCAACAGTCAGTCTTTGGTATTtctaagcacttttttttttatgtccgaAGCGCCTCCCAGTTTCTACCTGGGATTCACACGCCCTCGTGAAAAACTCTCTCCCCTCCCTTCAGCTCCGTTTTATAAGAGTTGATTAGTATCTGCCAGGCATATTGCTGAGCATAGACACCAGCCAGGTTGACTTCTACTCCCAATTCTATCAGTAAGACTCTATCTGCATCCTTGTCCCGAGATGAAGACAGACGCTGCGCTCCGTTTGATGTCCCTGATGTCTATCTGGATGTGGACCAGTGAAGGTCAGATATTCCAGCCCGTGCTTACATCTAATGCTTTCCTAGCCAAAGTCACCAGCAACACAGTGATACTATCGCAGCCGTACTGTGTGTTTAATCAGCCGTGCCCCGGCTGTGTGATATGGCTGGTGGCCGGACTGTGCTCAGCAAACGCCAACTTTGACGCTCTTGCAAACAGCTCAGCTAGCAGCATCCTCAGCTTGTCGCCCTACCCATCGGCATTCCTCCCGTCATCCTATAACTTCTTTGTGACCCGAGTTGGATATCTGGCAGACTTCCCCTGCAGTCAGTACCCCGGCAGTTCCTACTTCGTGGTCGGCGCTGACGGGCTTTGCAGCACCGTCAACTGCAATGGTGTATTACCTAGTGGATCCACCGTTTGTTTCAAGTATCTCCTAATCGATGCTAACGGGACTCTTGTTAATTCATCGTACTGGTCTGGGAACACTACTCTTATCCAACTGCAACCCCTTTCCAACATTTACGACGGTCTGAGTGCGAGATCGGGCGCCATGGTGGTCATCACCACCCTCCTGTGTGTGGCCGCGGCTCTGCTTTTGCTTCTCTTCCTCTGCATGCTGTGCGTGACCTGCTGCACCAAGAAAGACGGCAAGCAGGTGTCAGTCATGAACTCGATCCGCATCCCCCGCTACGACACCCACAACCTGAAGGAGCGCGCGCACCCCTACGACAACCCCTCTTACCAGGCGGACTCCAAGAACTACTCCACCTCCTCCACCCTGCCCAAGGACGGCGCGAGGAAGCTGTGAGCTCCCGGACACACTCGAAATGAAGCCGTATGTTTGAAAGGCTGGGTGAAGGTTATCTTTTGGTCATCGTCTTGCAGCTTTTTGTAAACTCTCGCGACCTCAGTATtgtttttatgataaaaaacgGATGGAACAGGACTACGCTAACAGGCAAATTCACAAGATGGCGCTGTTTAGTAGGAAATATGTGTAGTATTTACTAGTGCAGCGCTTTCTAACCTTTCTTGTCTTAGGGGTCAAATGGGTCTCAATTACCTTTTATCAACAAACCAGGTGAATTTGCTTCTTTTAACTCATcttatatattgcattattaatattcctatttttttttctaatttaatcaTGATTCTTTTTTAATTCGTTATTCTCCATTCTCTTTGTTACTGGTTTTATGAGTCGTTTTAATCTCCGTTGCATACCAAGCAGTTACCCTGGTTTTGAAAATCTTGAGTTTTGGTTAAAATGTTACGAACAAATTAGTGCTGTCGGACGATTAAccgtatccaaaataaaagcttttgctggcatatatgtgtgttatgtatttagaaatgcatacagtatatatttacatgtattaacatgtctgtgtttatataattgGTATTATAAATAggtgtattaaatatatgcacaacatattttctgaaatatacacatgagtgtgcatgtatttatatatatatagtacacgTATTACGTAAACAGAAATGTTGCACGATTAATCAGTTGACAGCACtagaatttacatttattacaggtgttttaaggttttctttgatttttattcatgttttatgcaGGAATTATACTTCACAGTCTTTAAATGCACTCAAAAGTAGCAGGTCCGGAATTAATACCAtgcaatgaataaaatgtatttttaataattatacagtTAACATCTGAGGAAGCATCCTAACTGTGATACAACCTTATAAGTTTATTGATGCACTAATGAGCATAAAAATAAAGCGTATACACAAGTA

Function

GO:

id name namespace
GO:0072046 establishment of planar polarity involved in nephron morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57176 lncRNA downstream 33256 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 33256 22791710 ~ 22793053 (-) False G38634
XR_006250930.1 lncRNA downstream 785046 22038360 ~ 22041263 (-) True LOC122344815
TU57216 lncRNA upstream 42237 22873971 ~ 22876437 (-) True G38658
TU57350 lncRNA upstream 204723 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 295485 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 513855 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 525840 23357574 ~ 23358147 (-) True G38769
XM_043240617.1 mRNA downstream 2443 22793505 ~ 22823866 (-) False rasa4
XM_043240616.1 mRNA downstream 2446 22793505 ~ 22823863 (-) True rasa4
XM_043239958.1 mRNA downstream 35502 22761711 ~ 22790807 (-) False clip2
XM_043239957.1 mRNA downstream 35502 22761711 ~ 22790807 (-) True clip2
XM_043239959.1 mRNA downstream 35503 22761711 ~ 22790806 (-) False clip2
XM_043238402.1 mRNA upstream 909 22832643 ~ 22835323 (-) True prkrip1
XM_043239969.1 mRNA upstream 13012 22844746 ~ 22874871 (-) False vps37d
XM_043239968.1 mRNA upstream 13012 22844746 ~ 22872911 (-) True vps37d
XM_043239962.1 mRNA upstream 51621 22883355 ~ 22900893 (-) False rabep1
XM_043239961.1 mRNA upstream 51621 22883355 ~ 22900893 (-) True rabep1
XR_006251119.1 other downstream 786275 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 866425 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 942287 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 942287 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1000204 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 770510 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 920146 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1055569 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1365971 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1756294 24588028 ~ 24594116 (-) False anapc2

Expression Profile