RNA id: XM_043238424.1


Basic Information

Item Value
RNA id XM_043238424.1
length 1168
RNA type mRNA
GC content 0.42
exon number 9
gene id imp4
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9792187 ~ 9796033 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgaaatgccgTAACACATTTGTTCGTTGTCGGTGATTGGAACAGAGGATTGACCAACAGGAAGTCGTTATAGTATCGGCAAGGCTGAATTATCACGTGTAGTTGAGCAAAATGTTGCGGCGAGAGGTAAGACTGAGAAAAGAGTACCTGTACAGAAAAGCACAGGAGGACAGACTGTACACCAttgaagagaaaaaacaaaaggtcAAAGCTGCTTTAGATGAAAATCGTCTTTTACCCACTGAAGTTCGGAAGGAGGCTTTAAACTTACAGAAACTGTTGGAGTTTGACGATGAGGGTGGAGAAGGTGTTAGTTCTCATATGGACGATGAGTACAAATGGGCAGGAGTGGAAGACCCCAAAATAATGgtcacaacatccagagaccccAGCTCTAGACTCAAGATGTTTGCCAAAgaaatgAAGCTTATGTTTCCAGGGGCCCAGCGTATGAACAGAGGAAACCATGAAGTTAAAACATTAGTACATGCTTGCAAGGCTAATAATGTCAGTGATCTTGTCATAGTTCATGAGACCAGAGGCCAACCAGATGGTTTGGTGGTGTGTCACCTTCCTTTTGGCCCGACGGCCTACTTCACATTGTATAATGTGGTAATGAGACATGACGTCCCAGACATTGGCACCATGTCCGAGGCCTTCCCTCACCTCATCTTCCACAACTTCACGTCACGTCTTGGCCGAAGGGTCTCTAACATCCTAAAGTATCTGTTTCCTGTGCCCAAAGAGGACAGCAGACGTGTTATAACATTTGCAAATACAGACGATTTCATCTCTTTCAGACACCATACCTACAAGAAAACCGATCATAAAAACGTTGAGTTGACAGAGGTCGGACCCAGATTTGAGATGAAATTGTACATGATCAAGCTTGGCACATTGGAGAATGAGAATACTGCAGATGTTGAGTGGCGACTCCATTCTTACACACGCACTGCCAAAAAGAGGACATTTTTAAGTGTGGAATAGCCCTATGTACTTGTGAGAAACCTGCAATGTTCAAAGTGGACATTTTCAATGTAATAGtggtctttttttcatttaattgtgacattttaaatatggatgaatttctttcattattataatgttgACACTTCcgcaattaaatgttttgtacagAGTTACCtggacaattaaaaaaaaaaa

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51347 lncRNA downstream 13949 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 25580 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 27655 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 544146 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 731373 9013306 ~ 9060814 (-) True G34594
TU51619 lncRNA upstream 485376 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 541714 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 582733 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 716897 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 720638 10516671 ~ 10517342 (-) True G35142
XM_043239701.1 mRNA downstream 453 9780838 ~ 9791734 (-) False araf
XM_043239700.1 mRNA downstream 453 9780838 ~ 9791734 (-) True araf
XM_043240165.1 mRNA downstream 34354 9754034 ~ 9757833 (-) False tbx3b
XM_043240164.1 mRNA downstream 34354 9754034 ~ 9757833 (-) True tbx3b
XM_043240507.1 mRNA downstream 39230 9750652 ~ 9752957 (-) True tm2d2
XM_043239067.1 mRNA upstream 2261 9798294 ~ 9808373 (-) True rabl6b
XM_043239068.1 mRNA upstream 12836 9808869 ~ 9813130 (-) True tcn2
XM_043240797.1 mRNA upstream 20835 9816868 ~ 9829040 (-) False si:ch211-102c2.8
XM_043240796.1 mRNA upstream 20835 9816868 ~ 9829039 (-) True si:ch211-102c2.8
XM_043240798.1 mRNA upstream 20835 9816868 ~ 9829038 (-) False si:ch211-102c2.8
TU51236 other downstream 389564 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 571680 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 862134 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1114469 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1360612 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 529082 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 665175 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1072331 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1127894 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1623922 11419955 ~ 11467122 (-) False hmgn7

Expression Profile