RNA id: XM_043238425.1


Basic Information

Item Value
RNA id XM_043238425.1
length 1431
RNA type mRNA
GC content 0.53
exon number 10
gene id atad1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4456819 ~ 4462417 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTGTAGAGATTTTTTCCGCACGGTGCGTGTAGCGCGGTGACACAAGTCGATGTATGTGGATGACAGTGATGCTGTGAAATATTTACACACCCAGATAGTTTTTCTCGGCCAATGGGCTGACGGCGTGGGCGGAGCAAGATGTTGAGTGACATTCCTCGAGATGCCCTCCTCCGCCCCCTCACCCGGAATGAGGTGGTGGGGATGCTGGTGAGACTCACCGTCTTCGGAGCGGCAACCTATTACAGCATCAAATGGGTGGTGGAGGCCTTGGACCCGACACAGAAGCAAAAATCCCAAGCCAAGAAGCGGGCCGAGCGGTTGATGAAGCAGATCGGCGTCGAGGGCGTCGGTCTGACCGAGTACGAAATGAACATCGCAACTCATCTCGTCGACCCCCGCGGCATCAAAGTGACCTGGAGAGATGTCGCCGGACTAGATGAAATCATCTCAGAGCTGCAAGACACCGTCATCTTGCCTTTCCAGAAACGCCACCTGTTTTCTGGCTCCAAACTCTTGCAGCCTCCCAAAGGGGTGTTATTGTACGGACCACCGGGGTGTGGAAAGACTTTAATTGCCAAAGCTACAGCGAAAGCATCCGGATGCCGCTTCATTAATCTCCAGGCCTCCACTCTGACCGACAAGTGGTACGGCGAATCTCAGAAGCTGACCGCCGCCGTGTTCTCGCTGGCCGTCAAGATTCAGCCCTGCATCATATTCATTGACGAAATCGATTCATTCCTGAGGAACCGTTCCAGTATGGACCATGAGGCCACCGCTATGATGAAAGCCCAGTTCATGAGTCTGTGGGACGGACTAGACACAAGCTCAAGCAgccagGTGATGGTGATGGGGGCCACCAACAGACCACAAGATGTGGATGCAGCGATACTCCGCAGAATGCCCACAACCTTTCACGTAGGGCTGCCTAATGCAGCTCAAAGAGAAGAAATCCTCAGACTCATTCTGTCTGGAGAAAATTTAAGTAATGCGATTAACCTGAAGGAAATAGCGGGTCAGACCGAGGGCTACTCCGGCAGTGATCTGAAAGAGCTGTGCCGAGACGCCGCCATGTACCGCGTCCGAGACTACGTCCGCAAACAGCAGATGAAACAGATCGCACAGCAGTTCCAGCTGGACGAAGACGAGCATGTGGACAGCACACAGCTGAGGCCCGTGACTCAACTGGACCTGCTGTTTGGCCTAGATAAGATGAGGGAGTCCAAACAGGCCACGGCTACAGCTGACCCAGCAAATCTGAGAGAGGTGCCTCTGGACTGAAAACCTCTCGCTTTACACCCTCATACAGTCatactctctctgtctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K22530 ATAD1; ATPase family AAA domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48755 lncRNA downstream 358446 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 405347 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 405350 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 487855 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 552273 3898591 ~ 3904546 (-) True G33140
TU49028 lncRNA upstream 397582 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 451464 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 562528 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 570146 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 571694 5034111 ~ 5053903 (-) True G33333
XM_043240871.1 mRNA downstream 86341 4350227 ~ 4370478 (-) True LOC122346182
XM_043239521.1 mRNA downstream 137084 4287799 ~ 4319735 (-) True LOC122345409
XM_043240860.1 mRNA downstream 263996 4144856 ~ 4192823 (-) False LOC122346168
XM_043239522.1 mRNA downstream 314916 4137531 ~ 4141903 (-) True LOC122345410
XM_043240840.1 mRNA downstream 558241 3878650 ~ 3898578 (-) True piwil2
XM_043238166.1 mRNA upstream 25424 4487841 ~ 4557844 (-) False galnt9
XM_043238165.1 mRNA upstream 25424 4487841 ~ 4557843 (-) True galnt9
XM_043238167.1 mRNA upstream 25424 4487841 ~ 4522834 (-) False galnt9
XM_043239098.1 mRNA upstream 464910 4927327 ~ 4947953 (-) True si:dkey-112e17.1
XM_043240688.1 mRNA upstream 486667 4949084 ~ 5001056 (-) True zdhhc8b
TU48820 other downstream 263738 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 263738 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 263738 4144927 ~ 4193081 (-) False LOC122346168
TU48805 other downstream 562344 3885425 ~ 3894475 (-) False piwil2
TU48850 other upstream 160073 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 968847 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 1493882 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 2361754 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 2461013 6923430 ~ 6943192 (-) True usp20

Expression Profile