RNA id: XM_043238436.1


Basic Information

Item Value
RNA id XM_043238436.1
length 2816
RNA type mRNA
GC content 0.40
exon number 4
gene id si:ch211-215c18.3
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8569849 ~ 8574583 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGAggctggtcattttttttttaaagtatcaaGCAATGCGAGATTCGAAGCAGAGAAGACACTTAAACCTAATGttcgtgtaaaaaaaaaagtttatctttatttatagcTTAAAGCGACCTCTGCTGGTGAAACATTACCACTGACGAGCGTGATTTCTTTAAATCTGACACGAGATCTACTGCTGCCCAAATTCCCTCAGATGACCAATAAAGGggctttattgttttaataaagggGGCAAATATATATCGAGGCTCTCGAGATTGTCGCAGTAAGAGCTGACTCGCGCGCGCAGGAGCCGGAGGCTGCAGTCTCGAGCTGTGGCTTCCTCAGCATCAGCATCTCCGTCGACTCGCATCTTCTGTGGAACTAGAGCACCTAGACCAGAGGAGGAGGAAAGGGCCGGCTATATCGGCTTGAAGCTGTTTAAAGTAGGATATTTGTCCCTGAAGAGAAGAGGAAATGACGTCTTATCCTTGGCTAGCAGCTCGTTTTGTGTTGTCATGTCTGTCGTTTATGGCGGGTGTGATCACCGCAGCAGATCCATACCAGAAACCCAGCTTCTTGGATTTTAACTCTTGGTTCTGGAACACCCCTCGAGGGCCACAGATGTACTCCTGCCTTACTTACATCGAGAGGAACCTCCGGGTGGATTGCGAATTCCCAGAGACCCACAAGATCCCGGGGCCATTCTGCGAGTTCAAACAGGACGGCCGACTCATGGGCTCTACCTACCCAAACACCCCGGTCCACATGATCCCGCCTATCGAGACCCGACGCCGAGCCAACGTGACCCTGGTGTCACCTAACATCTGTCGCCTCACCTGGATGCCCATGTCCGATGACCGAGCATACACCTACACCTGCAGGGTTTATCAGGGCAGCACCTGGAAGGAGAACAGCATGGCATACCACCAAAGAAATCTTCTGGTGTGCTCCGCGTTAAGCGTATTCCTTCACACCGGACCGTGGATGCTTGCGGTCGTGATATCGCTTCCTGTTTCCCTTGGGCTTCTCTCGGAATGACCAGAACAACATCGAACAGGCTAAAACTCGAAGCCATTCTCACATTCAACTGCCTTTTGCATTGTAAATCAGATTTAAATTGAGTTATTTTTTCATCTTACATGGTTATGTTGaattttatgttgcttttttttacagtcctaAAATTGCTGTGGATATTATCCTTATTACATCTTCAGGATTCACAgtgaagacaaaaaacaaaccagacatAACGCATGTGGCCCACTCAAGTATATAagtccaaaatgtaaaaaatactaaacatgAAAGTACATTAGTATATAATGCAAATTAGGATGATGAACATGTTCTTACCACCTAAAGATGTCCAACTAACAGGTGTTTATAGTGAAATACTACAGTTGTACTACACTACTGTAcgaaagtttgaggtcagtaagagatctggaaagaaattaatatttttattcactgaggatgcattaaactgatcaaccGTGCCAGTAAGGACATtcaaattgttaataaatatttctatttctatacaTTTCTGCTCATCAAAGAACACATTTAGTACAGTTTTTGCATAAAActgcatattggaatgatttctaaagaatcacgCGACACTAAAATCTGgacagctttgccatcaaagaaagtattctttttaaatatattcaaatataaattaatattttcaattaaaactatttaaaaaaaacttcataatcaaataaatgcagccttggtgagcattttaaaatatctaactgactcaaaaaaaatgtaacagtaGTGTACGttgatgttaaatatttaaatctgaaCATTTACAAACGACCAGTTTGTAACAACTGCTTAACCagtacaaaattaattttttttcttgaatacgCAGTAATATTGCTATGGCTAAAAGTGGCACGTTTGTCATTTGCACTGAATTCAGATGAAGGCATCCCAAATATCTGTCACCTAAGAAAAGTTGTAAGtaatatgttattgttttgatACACGGTATCAATTATGTGCTTCCTTCAATCAAATCATATAGTAGCTCAAAAagatattatactttttattgctgacatttttgtaatatttatagaaataactGAGTGATATCGTAATAAGAGTAATCTGTAATCTTATTTATCAGATGGCTGGTTTAACGATCCTTGCAATTTGTCCAGTGCAAAATGCATTACACAGTTTTATCGTTGTCTTagcgtttttgtttttcacttgaATGAGGACATCTCTGTCTGAAGGACATAACCGCCGCTGACATATTATATTGCAGCACTCACACATGATTGCAACTAAATATCCTGTGGACAACAATTCAAGGACTTTATGTTCAGTTTCGTTTAGTGTAAAGAACGACACAGGCCTGGAACGGAACACAAGTGCGTAGGAATGAGTCTCTTGAGGTTATGTGatgattttgtatttgaatgtaCTGTTACGTGTGTTTCATTGCGCTCGCATGCACCGTGCAGCTGCTGCACTTAACTTCCACGCGTTTCAGCTGCTTTTCACACAAGCTTCCTTGCACTAACCTTAAGTGCCTCAGGTTGGCTTTAAGGTATAATCTGAGCTTTAGCAATGTAGTGCTTTGGCCGTTTCATTTTAATGACTCACAAATACCGCATAGCAATATATTCAAGCGCCAGCACGCACATTTCACGCACTTCTATTTTTGAGGAAAGCCTCCGTTTTCCGTTCCTTCACTCTGTTTCCATCGCATCGTCTTATTTTATGAAGGATCTATACTGAGAAATGtcacagaaaacaataaagGAATGTAGAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50668 lncRNA downstream 94669 8474979 ~ 8475180 (-) True G34401
TU50667 lncRNA downstream 96500 8472323 ~ 8473349 (-) True G34400
TU50663 lncRNA downstream 101990 8467620 ~ 8467859 (-) True G34396
TU50662 lncRNA downstream 104463 8464788 ~ 8465386 (-) True G34395
TU50659 lncRNA downstream 106246 8463373 ~ 8463603 (-) True G34392
XR_006250971.1 lncRNA upstream 99672 8674229 ~ 8677583 (-) True LOC122345093
TU50889 lncRNA upstream 99992 8674549 ~ 8676706 (-) False LOC122345093
TU50957 lncRNA upstream 314429 8888986 ~ 8890348 (-) True G34573
TU50958 lncRNA upstream 330850 8905407 ~ 8905624 (-) True G34574
TU50959 lncRNA upstream 341975 8916532 ~ 8916931 (-) True G34575
XM_043240225.1 mRNA downstream 862 8567082 ~ 8568987 (-) True thy1
XM_043240222.1 mRNA downstream 2771 8561395 ~ 8567078 (-) False usf1l
XM_043240223.1 mRNA downstream 2869 8561395 ~ 8566980 (-) False usf1l
XM_043240224.1 mRNA downstream 2908 8561395 ~ 8566941 (-) True usf1l
XM_043238509.1 mRNA downstream 20316 8546581 ~ 8549533 (-) True f11r.2
XM_043240151.1 mRNA upstream 19507 8594064 ~ 8609276 (-) True ddx31
XM_043239032.1 mRNA upstream 36955 8611512 ~ 8631326 (-) True ak8
XM_043239029.1 mRNA upstream 58338 8632895 ~ 8643790 (-) False tsc1a
XM_043239030.1 mRNA upstream 58338 8632895 ~ 8643645 (-) False tsc1a
XM_043239027.1 mRNA upstream 58338 8632895 ~ 8643645 (-) True tsc1a
TU50638 other downstream 138274 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 155043 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 848386 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 1172696 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1447385 7122339 ~ 7122464 (-) True LOC122346223
TU50888 other upstream 99992 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 354913 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 640951 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 763271 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1750558 10325115 ~ 10335342 (-) False si:dkey-96l17.6

Expression Profile