RNA id: XR_006250937.1


Basic Information

Item Value
RNA id XR_006250937.1
length 2116
RNA type transcript
GC content 0.43
exon number 9
gene id lrrc74b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1342606 ~ 1354414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAGTCTGGGCCAACAGGAGACACTGCTGCACTGATTTGCCTTCTCACAGATTTGATTTTAAGGATATCGATCCTGTCTGGCAGGGGAAACCAGAGTGAATCGAATGTGATTTAGTTTGATCAAAGCATTCTCAATATTCATTTTGCAAAGAAGCACAGACTCGCGCAACGTATAAAATGGTAGCGGGCAAAAAGGTGACAAAAGAAAGCATTCTTCCATCAGTGTGCGAAGATGAAGGAGATGAAGGTGGACCAGAAGAAGATTTGGGAGCAATCGCGAGCAGGCCGGTCAGCAGACCCAGGAGTCTCTACAGCAGAGGAAGTGTGGATGGCCAAAGAGTGTCTAGATCACCCAGTCTGCATCAGAGCACAAGAACGGCCCATCAGGATGAAGATCATACGAATGAAGAAGACGAGGTGGATGAAGGTGGAGGTATCCGTCCAGGTGATGGACAGCAGCAGGAGGAAGAGTGTGTCATCGGTGACGTAGATTTTGACACAGACCTGGAACTCGACAGATTTCACAATGAAAGACGAGCATATGACCCCACAGGACAGTCAAGCTACAGAGAGGCTTGTAAGATGCTGAATGTAATTCCAGTGTCCTGCTTCCTCCGAAATATGAACCAGAGTGAACTCAACATGATGCATTATGGGCTGGGCTCACAGGGTACCAAAGCTCTGGCCATTTCCTTAGTAACCAACACCTCTGTCCTGAAGCTCAATCTGCGAGATAATTGGATGGAGGGAATAGGCGGGGCTGCCATTGCTGATATGCTCAAAGAGAATTGCTACATCACAGAAATTGATTTGTCTGAAAACCGGATGGGTGAATATGGAGCCAGGGCTCTGTCCAGCATGCTGTTGGAAAACTCTACCCTTTTCTCTCTCAACCTCTCCGGGAACCATCTGGACGAGCGAGCGGCCAGACACCTGTCCCCAGCTCTGATCAGCAACCAGAAACTTCAGCACCTAGACCTGAGTCACAACAGATTCGGAGATATAGCAGGGGAAATTCTGGGTGCTGCTACTGCCGAGAACACGGGAATGAAGTCACTCAATCTGGCTTGGAACTGCATTCGAGGAAAAGGAGCCATTGCAATTGCTAAAGGCCTGGAGGGAAATATCTTCTTGCGGACCCTGGATTTGTCATACAATGGCCTGGGCAAGGAAGGATCTGTGGCTCTAGAAGAAGCACTCAAACACAACAATACACTGGAAGATCTGAACATCAGATGTCTAGGAACCCGATGCAGTCAGCGGGATGCTACgccattttaaaatcagttcaaGCGAACCCAGAGAGTGCAGTAGAGTTCTTAGACTTCTCTGATATTTGCGTGGACCAGGAATTTGAAGACTTATTCGAAAGCGCTAAAGAAACACTCCCAAACCTCCAGGTGAAACATGGTGGAAAAATTAACGCAGCGCTTAAAAAGAGCTGAGCTTTATTCAGAAACCCATTCTGGACAATCCGATTGTAATCGTGTAGGCTTGTAGAACCGCAAACGCATTTCTGAACTCGCATAAAACCGAGACTTTAAACTGATTTGAATCTCACTCCACACTCCTCCACATGGCAAATTGGATCAAGTCATGGTTGATGGATCATGGTTTCCGGCGTTAAGGGAACAACGGTTCGGGAAGAATAAAGTTTCGAAAAAGATTTGATGACATTAGTGACCATAGACTTTAAAATGTTACGTGTGGAGCAAGCAGAATTGATCTAATTACTATACACTACCGTTGAAAAGTTAACGTTTTCAAAATAAGTCTGTAATGCATTATTTGATCACCAATTCagtaaatattatgaaatattataattcacaaaaactgttttctattcGAGAATAgtataaaatgtgaattattcatGTGAAATAagagttttcagcatcattacaccagtcttcagcgccacatgatccttcagaatattttttaaaagcattattaaaaaaattatgatcgATGTTGAAAAGAGTTGTGCAGCTTCTTCTTTGTGTGGAAACCATGGCATACATTTGataaagttcaaatgaacagcTTTTAATTGAAATAGAAAGCTACTAAAGTATTAAATgagtagttgacaaataaaaaatggactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47774 lncRNA downstream 50843 1289278 ~ 1291763 (-) True G32409
TU47599 lncRNA downstream 290427 1051867 ~ 1052179 (-) True G32292
TU47582 lncRNA downstream 463464 877910 ~ 879142 (-) True G32275
TU47578 lncRNA downstream 519777 820615 ~ 822829 (-) False LOC122344906
XR_006250945.1 lncRNA downstream 520142 820190 ~ 822464 (-) True LOC122344906
TU47832 lncRNA upstream 158631 1513045 ~ 1513312 (-) True G32440
TU47864 lncRNA upstream 182984 1537398 ~ 1539368 (-) True G32463
TU47861 lncRNA upstream 186812 1541226 ~ 1567149 (-) True G32462
TU47888 lncRNA upstream 252011 1606425 ~ 1607747 (-) True G32486
TU47992 lncRNA upstream 312284 1666698 ~ 1666906 (-) True G32572
XM_043240771.1 mRNA downstream 553 1337163 ~ 1342053 (-) False nipsnap1
XM_043240770.1 mRNA downstream 562 1337163 ~ 1342044 (-) True nipsnap1
XM_043240916.1 mRNA downstream 6422 1322375 ~ 1336184 (-) False castor1
XM_043240914.1 mRNA downstream 6423 1319955 ~ 1336183 (-) False castor1
XM_043240915.1 mRNA downstream 6425 1319955 ~ 1336181 (-) False castor1
XM_043240453.1 mRNA upstream 945 1355359 ~ 1403122 (-) True nos1
XM_043240454.1 mRNA upstream 5423 1359837 ~ 1403124 (-) False nos1
XM_043240640.1 mRNA upstream 69990 1424404 ~ 1494687 (-) False ksr2
XM_043240639.1 mRNA upstream 69990 1424404 ~ 1494687 (-) True ksr2
XM_043239847.1 mRNA upstream 147053 1501467 ~ 1506232 (-) True wsb2
XR_006251111.1 other downstream 6419 1322296 ~ 1336187 (-) False castor1
XR_006251108.1 other downstream 6422 1312604 ~ 1336184 (-) True castor1
XR_006251110.1 other downstream 6422 1312606 ~ 1336184 (-) False castor1
XR_006251109.1 other downstream 6422 1312606 ~ 1336184 (-) False castor1
TU47390 other downstream 1092851 246943 ~ 249755 (-) False rictora
TU47988 other upstream 320076 1674490 ~ 1693974 (-) False ypel1
TU48139 other upstream 612223 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 612223 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 665694 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 1142090 2496504 ~ 2554146 (-) True G32857

Expression Profile