RNA id: XM_043238448.1


Basic Information

Item Value
RNA id XM_043238448.1
length 8163
RNA type mRNA
GC content 0.51
exon number 45
gene id nipbla
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32770229 ~ 32799945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTAGCTGGCTCGGCTAAACAAACCCTGCTAGCCCGCGCTGATCTTTTTATAGCAGAGAGGGGGAGCCAGAGACTTACAGCAGACCGACAACCAACCTCTCATCCCAACAACAGTCCccttattttttcttctttgaagtTACCCCAAGCTAAGGATTGAGTGAGATGTGAGGGATGGTCAGCGTATAAATATCTCTGTGGAACTCTTTGTGCGTAAGACTTCTGTGCCCAGCCGTCAGTATGAATGGGGACATGCCACATGTGCCCATCACAACCCTTGCTGGGATCGCTGGTCTCACTGACTtgtTGAACCAGCTGCCCCTGCCCTCCCCTTTACCGGGCACCACCACTAAGAGCCTGCTTTACAGCGGGCGTGTAACTGAGGAAGTGGGGCGTCTGATGGGCTGCAGGGATGAAACTCTGGTCTCTCAGCTCGCCAATGGCCTCAGCCAGGTCTCCACGGAGCACATAGAGCTGAAGGACAACCTTGGCAGTGATGAGTTGGAGGGAGATGTACCTGTTCTGCTGCAGCTTTTGTTGTCTAGGAACCCCAACATCTTCAGGAATAAGACGGCGCCGAGCACTCCCCAGTATCCTGCCCAGGCGGGTATAAGTCAGCAGTCAATGGCGCCACCGTATAAAATCACGCATGGCTCCATGCAGGGAAGCCCAGCCTCTGCCAATTACCAGGCCTCTATGTCCCACAGCCCCTCTGGGCGTTTTGTGCCAGGGCAGTCTGGTTCTGGTGGACGGTTTCTGCCTCAGCAGAACAGCCCAGTGCCCAGCCCTTATGCCCCTCAGAGTCCTGCTACCGGCTACAGACAGTACCCACACCCTCCAGCCTACAGTCAACACCAGCACCTACAGCAAGgttCAGTAGCAAGCCCGATGATTCCAGGAGGCATGAGAAATGTTCACGAGAATAAGGATCAGATGAGGTCGGGTTTTACGTCTCACATACTGCAGTCCTCTCCACCTTACACTCCTCCTTGTGACGGGGCTCAAGAAATGCATCTGGGCTCACCGGACAAGCAGCGTGGTCTGAAGTCCAACGAGGGAGAGCGGGACCCGGCCGATAAGGCTGCGGTGTATGATATTGTGGGCTCGCCAACAAAAGACCCCACCAAGTTGATCCTGAGGCAGTCAAGAGCTAGGCCAGCAGAGGTGGAGCTTGGGGGAATGTACCCCGGTTCGGACCCAGAAGGAGAGCTTGTTGAGGCTCTTGCTGCAATAGAAAGAATGGAAAGTGAAGCTGCCATGGAAACGGACCGTGGTGCTAAAGAGGTGCAGGATAAAGaTAAGCCTTTGAAGAAGCGCAAACAGGACTCTCACCCGCAGGAGCCAGGCGCAGCTGGCACAGCTGGTTCAGGCTCTGGGGCtccaggtggaggaggaggggcTAACGCAGGGCACAGGCTCGCCCCTCAGGAGGCCAGCGCCGCTGGCACCAGCGCCAGCCGCCCAGGCCTGCAAGTGAGCTTGGAGCAAGCAGGCAGAGTGGAGGACGCCTGCATAGGCATACCTATCCCCGCCAGCGAGGCTCAGCGCTGGCCTCAGGAGCCGCAGGAAGGGGTCACTCCGAAGGCCCTCAAACACAAGCACGACCACGCTCCAGAACACCGGCATCAGCCCGATACCCCACGACAGAAGCACAGACCCGAGGGCCGGCACGGCGATGTCAGCGCGCAGCGTGCTGCTCAGTCTGGGAGTAAACCCGCAGAGCTGCTTCCGTACATGCTGGGCGAAAACACCAGTTCGGGTGTGCTTAAAAACTTCACCATTCCAAAAATCAGGAAAGATCTCGGAACAGGAGATATTCCAGAAGGCTGGAAGCAGCCGTGTGTGCGGCTAGAGAGATTGGAACCTGAGGTGGACGTGAAGAAGTCTGTCAAGCCTGTGGTCGTTCTGCAGAAACTCTCCATCGATGAAGTGCAGAGGCTCATGAGGGAGAGAGACTCGCGCGGCTCCAAGTCTGGCAAGAACAGGCTCTCCTCTGGGAGATCTGGGAAAGGTGGAATAGACCCGTCAGTGCTGAAGGATCTTCCTCCTGAGCTGCTGGCAGAGATCGAGTCCACCATGCCTCTGTGTGAGCGGGTAAAGATGAACAAACGTAAACGCAGTACTGTCAATGAGAGACCTAAGTACGCGGAGGACAGCTCAGAGGACGAGGGCTTCTCGTCTCGTAAACGTCAGAAGAAGGACCGTGATAGAACATGGGAGTTTGAGGAGCGTGACCGAAGGAGTTCAGGAGAGCATCGAAGAGGAAGCTACGACGCACGCAGAGGCTCAGGCAGCCGATATGACGAGTCTGACCAAGATTCACCTCCACCCAGCCTTAGTGACGttgcAAGACGTTTAAAGACGAAAGAGAAGCAGAAGAGGAGGAAAGCGTACGAGCCCAAGTTGACACCTGAAGAAATGATGGACTCCTCCACTTTTAAGCGTTTCTCGTTGAGTATTGACAACATCTTGGAGAATCTTGAGGATGTGGACTTTAATGCCCAAGATGATGATGAGATCCCTCAGGAGCTGTTGTTAGGGAAACAGCAGCTAAATGAATTGGGTAGTGAATCTGCTAAGATAAAAGCCATGGGCATCACCTGCAGGATTCCCTCTGATAAACTGGTGAAACTGTTGAATATTCTGGAGAAGAACATTCTGGATGGATCCAATCTTTCTACACTTATGAACCATGATAACGATGGAGAGGACGAGGAGCGTCTCTGGCGGGATCTCATCATGGAGCGTGTGACCAAATCAGCGGATGCGTGTCTGACAGCACTGAACATCATGACATCATTACACATGCCCAAAGCCGTGTACATTGAAGATGTGATAGAAAGAGTTCTGCAGTACACTAAGTTTCACCTGCAGAATACTCTTTACCCACAGTATGATCCGGTCTACAGAATCGACCCTAAAGGAGGCTCCATGCTGAGCTCCAAAGCAAAGCGAGCCAAGTGCTCCACCGCCAAGCAGAGAGTCATCATCATGCTTTATAACAAAGTGTGTGACGTCGTCAGCAACATCTCGGagctgctggaaattcagctgtTGACCGATACGACAATATTGCAGGTCTCTTCTATGGGCATCACTCCTTTCTTTGTGGAGAATGTCAGTGAGCTGCAGTTGTGTGCCATAAAGCTGGTGACGGCgGTGTTTTCTCGTTACGAGAAGCATAGACAATTAATTCTGGAGGAGATCTTCACCTCTTTGGCCAGACTGCCTACCAGCAAACGCAGTCTCAGGAACTTCAGgTTGAACAGTAGTGATGCTGAGGGTGAGCCAATATACATTCAAATGGTTAGTGCTCTGGTGCTGCAACTAATTCAGTGCGTGGTCCATCTGCCCTCCGAGAAAGACTGTGAAGACGATCACAAAAAGGTTGACGATGATGTGTTCATCACCAACTCGTATGAAACGGCCAGAAGGACGGCTCAGAAtttcctctctgtctttctcaagAAGTGTGGTAGTAAACAGGGTGAGGAAGACTACAGGCCGCTGTTTGAGAATTTTGTGCAGGATCTGCTGTCCACGGTCAACAAACCCGAGTGGCCCGCTTCAGAATTACTGCTAAGCCTGCTGGGAAGATTACTGGTGCACCAGTTCAGTAACAAGCAGACAGAGATGGCACTGCGAGTGGCATCGCTGGACTATCTGGGTACTGTAGCAGCCAGATTGAGGAAAGATGCTGTCACCAGCAGGATGGACCAGAAAGCCATCGACCGCATCATCAGAGAGAGCTCAGAGGGTGACGAGACTCAGCGGCTACAGAAAGCCTTATTGGATTATATGGATGAAAATGCAGAAACAGACCCTGCTCTCGCGTTTGCACGCAAGTTTTACATCGCTCAGTGGTTCAGAGACTGCACTACGGAAGCTGAGAAGGCCATGAGGAGTCAGAATCAAAAGGAGGACGACACGGACGGCACACAGCATGCCAAAGAACTCCAGGCCACCGGAGACATCATGCAACGTGCAGAAACTCGCAAGAAATTCCTTCACTCCGTCGTTCAATCAACTCCCAATCAATTTACCACTCTCAGGATGAATTCAGACACTGTGGACTACGAGGACGGCTGCCTTATTGTACGCTACTTGGCCTCCACCAGACCCTTCTCTCAGAGCTTTGACATCTACCTGACACAGattCTGAGAGTGTTAGGGGAGAGTGCCATAGCTGTCAGGACCAAAGCCATGAAGTGTCTGTCTGAGGTGGTGGCTGTTGACCCCAGTATACTGGCCAGGTCTGATATGCAGCGTGGTGTTCATGGCCGGTTGATGGATAACTCCACCAGCGTGAGGGAAGCAGCGGTCGAGCTGCTGGGACGGTTTGTGTTGAGTCGACCTCAGCTGACCGAGCAGTACTACGACATGCTCATCGAGAGGATACTGGACACCGGTATCAGCGTGAGGAAGAGGGTGATCAAGATTCTGAGAGACATCTGTTTAGAACAGCCCAACTTCACCAAGATCACAGAGATGTGCGTGAAGATGATCCGCAGGGTCAATGACGAGGAGGGCATCAAGAAACTGGTGAATGAAACATTCCAGAAGCTGTGGTTTACACCCACAGCCAGCCACGACAAAGAAACAATGAATAGGAAGATTCTCAACATCACTGATgtgGTTGCTGCCTGTAGAGACACTGGCTATGACTGGTTTGAGCAGCTCCTGCAGAATcttttaaagtCAGAGGAGGACTCATCCTATAAGCCAGCCAGGAAGGCCTGTGTTCAGTTGGTGGACAATCTTGTGGAGTACATCCTCAAATACGAGGAGGCACTTGCAGAGCACAAGAGTGTGAACTCAACACGGTTAGTCGCATGCATCACCACGCTGTACCTGTTCAGTAAGATCAGAGCGCAGCTTATGGTCAAGCATGCCATGACTATGCAGCCCTACCTCACCACCAAGTGCAGTTCTCAGAGTGACTTCATGGTGATTTGTAACGTTGCGAAGATCCTGGAGCTTGTGGTTCCTCTGATGGATCACCCCAGTGAGAGCTTCCTGACCACCATTGAAGAAGACCTGATGAAGCTCATCTTAAAATATGGCATGACCGTTGTCCAGTACTGTGTGAGCTGTTTGGGTGCCATAGTGAATAAAGTGACTCATAATTATAAGTTTGTATGGGCCTGTTTTAACCGTTACTATGGGGCTCTGACTAAGCTAAAGTTACAGCATCAGGAGGGCACGAACAGCATGGCGCTGGCTGCCACCAAAGCAGCGCTGCTCAGATCTCTCTTCACTGCAGGAGCTCTCTGCAGACACTTTGACTTTGACCTGGAGCAGTTCAAGGGCACCACTAAGGTTGTGATAAAGGAGAAGGTTTTGGAATCATTATTGTACTTCACCAATCACGAGGATGAAGAAGTTAAATGCAAAGCCATAATTGGATTGGGGTTCCTGTTCATCATGCACCCGAGTCAGATGTTCGTTCCAGAGGTGAAGTCTCTGTATAACGGGCTTCTGTCTGATAAGCGTTGCTCCATCAACCTGAAGATCCAGGTCTTGAAGAACCTCCAGATGTATCTCCAGGAGGAGGACTCTCGCATGCAGGAGGCCGACAGAGAGTgGCAGAAAATGTCAAAGCAGGAGGATCTCAAAGAGATGGGCGACATCTCCTCTGGTATGAGCAGTTCTATCATGCAGCTCTATTTAAAGCAGGTGCTGGAGTCTTTCTTCCACACGCAGTCCAGCGTACGACACTTTGCCCTCAATGTCATCGCTCTGACCCTCAGCCAGGGACTCATACACCCCGTACAGTGTGTGCCATATCTGATCGCTATGGGCACGGACCCAGAGCCCACCATGAGGAACAAAGCTGACCAGCAGCTGGTGGAGATTGATAAGAAATACACTGGATTCATCCATATGAAGGCTGTAGCAGGGATGAAGATGTCATACCAAGTGCAGCAGGCCGTCTTGGGTTCAGTAGGACCCGTGATCCGTGGTTTCCGTCAGGACGAGTCCAGTTCTGCTCTGTGTTCCCACCTCTACAGCATGGTCCGCGCAAACAGACAGCACCGACGAGCGTTCCTCATCTCACTGCTCAATCTCTTCGACGACAGCTCGAAGATTGAGGTGAACATGCTATTGTTCATCGCTGATAATCTGGCCTACTTCCCCTATCAGTCTCAGGAGGAGCCGCTGTTCATCATGCATCATATAGACATCACACTGTCTGTGTCAGGCAGCAACCTGCTGCAGACGTTTAAAGAGTCTCTCGTTAAGGTTCCTGGCAGGAAGAGCAGGAAGAGGAGACGGCGGCGGCGGCgacaccaccaccatcatcaccatcaccatcaacaacagcagcagcatcagcagcagcatcagcagcagcatcaaCAGCAGCATCAACAGCAGCAGAACGGTTCGGAGGAGGAGAGGGGAGAGCAGGGCGAGGAAAGAGAAAGGAACAGCGGAGATGAAGAGTTTGACGATGATGATTatgaagaggatgaggaagggCAGCGGGTGAGGAAGCCCAAGCCCACGGAGGGCGCCAGGCAGTCAGAGTCAGATTCAGAATCTGACCTTGAGGATGCTGATGCTGTCATGGAGCGTCTCCCTGACGACACAACATCTCTCCTGGACTTTGCCAGGGCATCTCAAGGCATACTGTTACTGCTGGTGCTCAAACAACACCTCAAGAACCTCTACGGCTTCTCGGACAGCAAAATTCAGAAGTACTCTCCCACGGAGTCCGCAAAGGTGTATGATAAAGCCGTCAACAGGAAGTCGTCGGTTCACTTCAGTCCACGGCAGACTATCGACTTCCTCCAGAATGATGAGGTTCATGATGACATGACGTATGAGCTGAAGAGGAAGATCGTCAAACAGTACCTCGACTTTAAGTTGCTGATGGAGCACCTGGACCCTGAcgaagaggatgaggagggaGAGACGAGTGCAAACGTGAGGAATAAAGCCATCACTGCACTGCTGGGGGGAGCAGCCACAAGCCCCCGAAACCACCACACTCTTGACTCTGAGGATGAGGACAGTGACGGAGAGGAGAGGACCCCAGGGGCGTCTCGACGCGGGAGGCGCGCGGCAGACTCGGCGGACCTGCTGTTGTCGAACATGAACGAATCCGTCAGCGCGTTGGACATCATCGCCATCCACTGCCCCAAATACCGAGACCGGCCACAGATCGCCCGCGTGATCCAGAGGAACAACGACGGCTACAGCATCCACTGGATGGCGGGCTCGTACTCCAGCTCCTGGACTGAGGCCAAGAGGCGCGACGGACGCAAGCTGGTGCCTTGGGTGGACACCATCAGAGAGACGGACATCATCTACAAAAAAATCACACTCACCAGTGGCAACAAGCTCAACCACAAAGTGGCGCAGACTCTACGGTCACTCTACGCTGCCAAGGACAGGAACTCCAGCTAATAATACGTAAACGCACGCACATACCTCCCATCTCGGATAATCTCAGCCTAAtgcaaaacacaaatacacacacactcacactctcactctcactctctccctctctctctcaccgtcTCTCTATCTACCAACATGCCTATCAGCCAAACATCTCCTGGgtcagccaaacacacacaaacatgagcGGCTATTCTACACTAcagactctttctctctctctgatgcaCTCTGGGTCTGGCGGTGACCTTTGGCCCTCTGCGCCAGAGTGCATCGTCGTATCGCAGGAATAAAATGTTTGGAGAAACATTGTATGGGTGCTCCTTCGCTGTTGTGCAGCAGATTTCTGGTTGTTTGATTTCTACTCCCAGTGTATCAtagtttaacataaaaatattgtttatatctataaaagaaatttaaatatatactgaatgttGAAAGAATtagtttgttgatgtttttacttcatttcttcctttattattattttttttttcttagcgtCAAGCAGCTTTCTATAGCTTAGCTCCTTCTTTACTGGCTGATGACGATGATTCTCTCTGTTGAGCTGTTTGTCCATTTTTGTACGATAGCACCGTGTGGCTGTAATTTATTGTGTATAGCATGCAGTGTCTGTGAGGAGGGCTGTGTCGAAGGAGATTTGCGATTACAGGTCGCCCTGCTCAGCGTAAAGGGACCCACATGCCTCTGATGGAACAAATACTGCAATAAATTTTCTACTTCTCTTA

Function

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0048565 digestive tract development biological_process

KEGG:

id description
K06672 SCC2, NIPBL; cohesin loading factor subunit SCC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61133 lncRNA downstream 2820 32767186 ~ 32767409 (-) True G41303
TU61093 lncRNA downstream 243160 32513392 ~ 32527069 (-) True G41273
TU61019 lncRNA downstream 289516 32480355 ~ 32480713 (-) True G41217
TU61018 lncRNA downstream 292389 32477262 ~ 32477840 (-) True G41216
TU60982 lncRNA downstream 324948 32444282 ~ 32445281 (-) True G41191
XM_043240162.1 mRNA downstream 12360 32738417 ~ 32757869 (-) True LOC122345737
XM_043240117.1 mRNA downstream 36497 32724898 ~ 32733732 (-) True opn4xb
XM_043240243.1 mRNA downstream 51058 32684513 ~ 32719171 (-) True pdlim5a
XM_043238262.1 mRNA downstream 88755 32638260 ~ 32681474 (-) False bmpr1ba
XM_043238449.1 mRNA upstream 2073 32802018 ~ 32812625 (-) True slc1a3a
TU61129 other downstream 24348 32744167 ~ 32745881 (-) False LOC122345737
TU60927 other downstream 455774 32283537 ~ 32314455 (-) False LOC122346085
XR_006251086.1 other downstream 476447 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile