RNA id: XM_043238449.1


Basic Information

Item Value
RNA id XM_043238449.1
length 2580
RNA type mRNA
GC content 0.47
exon number 9
gene id slc1a3a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32802018 ~ 32812625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGTTTCCCGCGAATCGTCCCGCGGCGTCTGGAGAGTCCCGTGTGGCGCCCCCATCAGGCATGACTCAGAGTAACGGAGAGACGCGTCTGCAGCGCAGCAGAGTACAGCAGCTGCGGGACGGCTTCACAGAGCGCTCGCAGAGGGCGCGAAACACCGTACAGAGCATCACCACCAATGACGTCAAAGGCTTCTTCAGGCGGAATGCCTTCGTCATCCTCACAGTCGCTGCCGTCATCATCGGTATAATTTTGGGATTCGGACTGCGGCCGTATAAAATGTCTTATCGAGAGGTGAAGTACTTCTCCTTTCCCGGAGAGCTGCTGATGAGAATGCTGCAGATGCTGGTGCTCCCCCTGCTGGTGTCCAGTTTAATCACAGGTACTGCGTATGGCGCCCTGGACAGCCGAGCTTCAGGGAAGATGGGCGTGAGAGCCGTGATTTActacaccaccaccaccatcatcgcTGTGTTCATCGGGATCATCATGGTGCTCATCATCCACCCGGGAAGAGGCTCTAAAGACGAATTCACCAAACAGGAGAAGATCGAACAAATCAGTCCAGCAGACGCCTTCCTCGATCTCATCAGAAACATGTTTCCTCCTAATTTAGTGCAAGCTTGCACACAACagTTTAGAACGCAGTATGCCAAGCGAGTGGTCACTGTTAAAGTTTTAGTGAACGAGACGCTGTTCAGTTTGAGCAACGGCTCGCAGGAGCTCAAACGTGAAGAGGTGATACCAGTGCTGGGAACGGTTAACGGAGTCAACGCGCTCGGACTCGTGGTGTTCTCCATGTGTTTTGGCCTCATCATCGGGAACATGAAGGAACAGGGTCAGCCGCTTCGGGATTTCTTTGACTGTCTAAATGAGGCCATCATGAGGCTTGTTGCCATTATCATGTGGTACGCTCCTCTCGGTATATTGTTCCTGATCGCAGGAAAGATCGTCGAAATGGACGATCTATCAGAAATGGGAGGCCAGTTGGGGATGTACACCATCACCGTCATCATTGGCTTACTGATACATGCAGTCATCGTGCTGCCGTTGCTTTACTTCCTCGTGACGCGTAAAAATCCATTTGTGTTCATCGCTGGACTTCTGCAAGCCCTCGTCACCGCTCTCGGTACCTCCTCCAGCTCTGCCACTCTGCCCATCACCTTTAAGTGTCTAGAGGAGAATAACCATGTGGATAAACGTGTAACCCGTTTTGTGCTGCCTGTTGGAGCCACCATAAACATGGATGGCACTGCTCTTTACGAGGCTCTGGCTGCCATCTTCATTGCACAAGTCAATGACATGGATTTGAACTTTGGACAGATCCTAACCATCAGcatcacaGCAACAGCAGCCAGCATCGGTGCAGCTGGGATCCCTCAGGCTGGCTTGGTTACCATGGTGATAGTGCTGACCTCTGTAGGACTGCCCACTGATGACATCACTCTAATCATCGCAGTTGATTGGTTTCTAGATCGGCTGCGCACCACCACAAACGTTTTGGGCGACTCCATTGGTGCTGGCATTGTGGAGCACCTGTCACGTCACGAGCTGCGCAACACCGATGCCGAGATCGGAAACTCTGTGGTGGAGGAGAACGAGACCAAGAAGTCATACCAGCTCATCTCTCAGGAGAGCGAGTGCGAGAATGCCAAGATCCCTGACAGTGAGACCAAAATGTAGCTGCCCCGTTTCCTGAGGAAAAACTGGAGTTTTTGTACAAACACTAGTGACTAGTGATTCATCTCAAGTCTTTTTGTATGCCTGTCAAAGACATCCAAATGTGATGAGGTTCAAGCAGAGATGGACACGCGCGGTCTCCTTTGAACTCTTTTATTGTAGATTAATAGATTTGATTGCCTTAGACGTACGTCTTTGTTGATTTTCTAGATGCAGGTTCGTTTTCGTTAATTCAAGAGAAAAACCCAATGTCATTAGGGAAATCATGTTGACTGTGATTCTTCTGCTTGGGCTGGGATAAATAAGCAAAttgatttcagatcattttgaaaaaagaGCTAGTTAGAAAGAAGCATTTTCAAACTGGTTGTTATGAAACACATGGGACGTTTTGGCAGCTCAAGTTGGAAAGTGATGCTGCGAGTCCAGAAACAACAGTGTATTGCTACACAACTACAGAAGCCTTTATAAGTGAAAATAAGCGGGAATCTGTGAAGCCGCTCAGACCATGCATGATTTGTTATTTCATAGATGCAAACTATGCCCTAACTATACCCCTTAAGTACAGTCCAACAATTAATTAGTTGTAATAgtcatttagaataaataaaaaagcaagacacAAAGACAAGAGAGTGGAAAGGGATATAATGgtcattttatgtcattttcattttaaaagtcttGGTTTTATGCATGTTGTCATGGAAAATGAGtctttaaagtgaattttacaGCACGGCTATTTTTGAAAGCGGTCTTTATGACCTTTTTCCACATGTGATGTGTTTGCATCCCTGTTTTGAAAAACTGTACATTCAACTGATGTAATCATCTTATTTCAAGACTTTTATAGATGACTGTCGGTTTGAACGAAATAAAGaaatctattaataaaaaaa

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05614 SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61133 lncRNA downstream 34609 32767186 ~ 32767409 (-) True G41303
TU61093 lncRNA downstream 274949 32513392 ~ 32527069 (-) True G41273
TU61019 lncRNA downstream 321305 32480355 ~ 32480713 (-) True G41217
TU61018 lncRNA downstream 324178 32477262 ~ 32477840 (-) True G41216
TU60982 lncRNA downstream 356737 32444282 ~ 32445281 (-) True G41191
XM_043238448.1 mRNA downstream 2073 32770229 ~ 32799945 (-) True nipbla
XM_043240162.1 mRNA downstream 44149 32738417 ~ 32757869 (-) True LOC122345737
XM_043240117.1 mRNA downstream 68286 32724898 ~ 32733732 (-) True opn4xb
XM_043240243.1 mRNA downstream 82847 32684513 ~ 32719171 (-) True pdlim5a
XM_043238261.1 mRNA downstream 120544 32638260 ~ 32681474 (-) True bmpr1ba
TU61129 other downstream 56137 32744167 ~ 32745881 (-) False LOC122345737
TU60927 other downstream 487563 32283537 ~ 32314455 (-) False LOC122346085
XR_006251087.1 other downstream 508236 32214293 ~ 32293782 (-) True LOC122346090

Expression Profile