RNA id: XM_043238475.1


Basic Information

Item Value
RNA id XM_043238475.1
length 2217
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122344872
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27910227 ~ 27914589 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtgttcattAAAAGTGTTGAAATCGACGGAAAGGTTCAGGTGTTTATGTAGAATGAGAACGAGAACTGCAGAACCAGAGGAACGCTTTAACCGGCCAAAACGGAACAATGATCTCCAAAACTATGACACTGTTTTGTGCTGCTTTCAGCCTCGATCAAAAACCGTCTGTTCTGGTTTGCTAGTTAACGGAAACAGGACACACAAACTTGCGTTTGCGAGAAAAAAGTCCTAGTTATGAGATAAAATAGGAGTCTTCCCGGTGAAGAGAGATGGCTCTTATCAAACAGGAGAGTGAAGACCTGAGGATCGTAGAAGTATTCAGCCTGAAACATGAAGAGACTGAGGAACAAACGGGTTCGTTTCTTTCTCAAAGAGGAACTTACTCATTTTTTGTGCAGCTCTACAGTGTCTTAATTAGCGTGGTTTTATTTGGCATGGAGTGGGTTCGACCGGACTAACACTAACACTTGCCATGTcctaattactgtaattatgagATACCAACTTGTAAAAAGTGTTCACATCCTTAAGTTATGAGTTTTCTGAGAAGCTTCACCATGACTGTACTTCACGCAGAACCATAGAAAATACATGCTATAATATAACAACAGATTACGCATGTTATTTTCTTCTTGTTTGTTTAGGTTAGCAATAACATTTGTCGCAGTCATTAATAAGAAACAAACAGTAAGTGTATTTACCTGACGCGCTCTATGTTTGATGACAGTAGCACACACGTGTCTTATGTTCGACGGGGCCTCAGTCTGTTGACAGTCGCTATGGAGACGGGTGATCCCGAGCTCAACGTCGTGTGTTGTCATCTTCAGATTACGTTCTCCAGCAGACTTACTATGCTAAATTCAGacctgatgacaataaaaaaagagcgTCAAGAAGCGAAAGAAATAGAAGAGAAATATCAATATAAGAGGCGTGATTTCTTGGCTGTAGAAAAATCCATACCGACTGAAAGAAATTCCGTTCAGAAGACCAAACCTCCCAGTTACTTAACTTGTCACGAATGTGGAAAGTGTTTCACAATAAAAGGAAACCTTAATGAACACATGAAAACTCACATTAGAGAGACGCCATTCCCGTGTCTATACTGTGGGAAGACTTTCAAACTAAAAGGAAGCCTGGATGAACACGTGACCATTCACACTAGAGGGAAGCCATTCGCTTGTGATCATTGTGGAAAAAGTTTCAGTAAAAAAGGAAACCTTAATAAACATGTGACCATTCACACCGGAGTGAAGCCGTTCACTTGtgatcagtgtggaaagagtttcagatATAAAGAGACACTTAATTCCCACACGAAacttcacactggagagaagctgTTCACGTGCCAACattgtggaaagagtttcacgcTAAAAGGAAACCTTAATGAACACATGAAGATTCACTCCGGAGTGAAGCCGTTCTCCTGCCAACACTGTGGAGTGAGCTTCGCTaaaaaaggaaaccttaaaGAACACCTGAAGATTCACTCTGGAGTGAAGCCGTTCATCTGCCTGCactgtgggaagagtttcattaaaaaaggcACCCTTAATCAACACCTTACCATTCATTCAGAGAAGCCGTTCACTTGTGATCAGTGTGGAAAGATTTACAAATATGAAGAAAGCCTCAAGTCCCACATGAAGAGTGAACACTCAGGAGAGAGTGGTTTTCATCAGTGTGATCGGTGTGGAGAGAGCTTCAGCTGTAAAGTAAGCCTCTACACTCATGTGAGACTTCATACTACAGAGAAGGCTTTCACCTGCCAGCTGTGTGGAGATAGCTTCTTACAAAACGGAAATCTGAAGTCCCACATgaggattcacaccggagagaaacgatcggtgtggaaagagtttcagacGTGACCCTTGATTCACACGGGAAGAGGAAATGGATCATAAATAGACTTTGAACAGATTAAATGTTGTTAATACCAAGCAAATGTAAAGAAGTGACATGACTGGGGATGtctttttgttagttttaatggcaacaaaaaatacacatttctgtGAAATGAAGGGGACTTTCACACTGAAGTTGAATGAACTTcgggtcccactttatattaggtgaccttaactattttatgtatttacctttaatttaatcatttggtacaatgcacttattgtgtacatgtttttacattgtgcttgtattttcaaaaatatctatatgtaattatatctttataattaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59253 lncRNA downstream 14266 27895643 ~ 27895961 (-) True G40021
TU59171 lncRNA downstream 120398 27748460 ~ 27789829 (-) True G39964
TU59154 lncRNA downstream 259400 27650450 ~ 27650827 (-) True G39951
TU59121 lncRNA downstream 370900 27538940 ~ 27539327 (-) True G39936
TU59120 lncRNA downstream 371366 27538488 ~ 27538861 (-) True G39935
TU59307 lncRNA upstream 265744 28180208 ~ 28180575 (-) True G40057
TU59308 lncRNA upstream 266160 28180624 ~ 28180999 (-) True G40058
TU59328 lncRNA upstream 328197 28242661 ~ 28243655 (-) True G40074
TU59330 lncRNA upstream 331954 28246418 ~ 28246665 (-) True G40076
TU59333 lncRNA upstream 340457 28254921 ~ 28255207 (-) True G40079
XM_043238492.1 mRNA downstream 18887 27886041 ~ 27891340 (-) False LOC122344874
XM_043240880.1 mRNA downstream 294771 27605812 ~ 27615456 (-) False LOC122346185
XM_043240878.1 mRNA downstream 294853 27605812 ~ 27615374 (-) False LOC122346185
XM_043240879.1 mRNA downstream 299920 27605812 ~ 27610307 (-) True LOC122346185
XM_043238945.1 mRNA downstream 305818 27593593 ~ 27604409 (-) True LOC122345116
XM_043240825.1 mRNA upstream 422937 28337401 ~ 28683169 (-) True LOC122346138
XM_043238409.1 mRNA upstream 1029277 28943741 ~ 28944764 (-) True LOC122344834
XM_043240766.1 mRNA upstream 1260487 29174951 ~ 29270700 (-) True brinp1
XM_043239775.1 mRNA upstream 1388679 29303143 ~ 29323685 (-) True LOC122345544
XM_043239773.1 mRNA upstream 1388679 29303143 ~ 29323683 (-) False LOC122345544
TU59237 other downstream 14773 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 511507 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1798825 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1800657 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1808818 26101339 ~ 26101409 (-) True trnag-gcc_62
TU59335 other upstream 341364 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 1546121 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 1702535 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2011921 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 2177485 30091949 ~ 30093513 (-) False rnf170