RNA id: XM_043238496.1


Basic Information

Item Value
RNA id XM_043238496.1
length 5200
RNA type mRNA
GC content 0.43
exon number 14
gene id gpsm1b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29673233 ~ 29698626 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacaggactgAAGTGCGTCTGCTCAGAGCCCCAGAGGAAGAGGGAAGCAGTGAGCAGCTGGAGTTTCTCTACGGCTCCTACAGCTCACCAATGGCTCAGTCGGCGGGCAGCATGGACTCGGATCTGGCCAGCAAGCGGCTCCACTCGAGGATGGAGGCATCTTGTCTGGAGTTAGCGCTGGAGGGGGAAAGACTGTGTAAAGCAGGAGATTTTAAAGGTGGTACAGCGTTCTTTGAAGCAGCTGTTCAGGTAGGAACAGAAGATCTCAAGACCCTCAGTGCCATTTACAGCCAGCTGGGCAACGCTTACTTCTACCTGAAGGAGTATGGCAAAGCCCTGGAGTACCATCGCCATGACCTCACGCTCGCTCGGACGATCGGGGACCGGATTGGGGAAGGCAAAGCCAGCGGAAATCTGGGAAACACTCTGAAGGTTTTGGGCCGCTATGATGAAGCTGCTGTGTGCTGTCAGAGACACCTGGACATTTCTCAAGAACAAGGAGATAAGGTCGGCGAGGCCAGGGCTCTGTATAACATGGGGAACGTGTTTCATGCCAAAGGAAAGCAGCAGCTCTGGGGAGTCTCACAGGATCCTGGAGAGCTTCCTCCTGATGTCAGAGACACGCTGCAGCGAGCCACAGCCTTCTACGAGATGAATCTGTCTCTGGTTAAGGAGTTGGGAGACCGAGCAGCACAGGGAAGAGCCTTCGGTAACCTTGGTAACACTCATTACCTTCTGGGTAATTTTGTCGAGGCCATCAAGTTCCACAGAGAGCGTCTCTCCATTGCAAAGGAATTTGGCGACAAGGCCGCTGAGCGCAGAGCATACAGTAACCTAGGCAACGCTCTCATTTTCCTGAGCCAGTTCAATGCAGCCACAGAGTATTACAGGAAAACCCTGCAGCTCTCTAGGCAGCTGAAGGACCAGGTGATGGAAGCTCAGGCGTGTTACAGTCTGGGGAACACATACACATTGCTGCAGGAGTATGAACGTGCCATAGAATATCACCTCAAACACCTCCTCATAGCTCAGGAGCTCAACGACAGGGTCGGGGAGGGCCGGGCCTGCTGGAGTCTGGGTAATGCTTACGTGTCGTTGGGAAAGCACCGTCAGGCTCTTCATCATGCCCGGAAACACCTGGAAATCTCCAGAGAGATCGGAGACAGGAATGGAGAGCTGACGGCCAGGATGAACGTGGAGGAGCTGATGGAGGCTCTAGGGGTGAAGGAAGCGGATCTCTCTCCGTCTGAATCGGAGTTTAAAGTGCAGGGAGCCAGACCTAAGTTCATCAAGAAAACCAGCATGGAGAGTGTGGACCTGTGGAAATACAGCTCTGAAAAGAATGGAGATGCACCAGATGTTGATGGCATATCAAGAAGGTCGAGGAACCAGCTGTCTCTGTCTAGCAGAAGCAAAAGTTACACAGAAAGTCAGTCATCAGATGAGAGACATTGGCTCGACTCACCTGTGGACACGGATGATATCACTGTTCATGTCACACCTCCAaAACTGGCTCGTGACGCATCGGATGAGGACTGCTTCTTTGACCTGTTGAGTAAGTTTCAGAGCAGTCGTATGGATGACCAGCGCTGTCAGCTGGACGAGCCGCCCAATGGAGAGAATGCCGGAGGAGCGGATCCAAACACAATCAATGACATGATCGATGCCAGTCTGCTGACGTCTCCACAAACGGAAGAGCTCTTTGATTTGATCGCCAGCACTCAAAGCCGCCGCCTGGACGATCAGAGAGTGAGCGTCAGTAACCTGCCCGGACTCAGAATCACCCACAATAACCTGGGCCACCTGTGTGGAGAGAGTGACCTGCAGGAGCCCAGCGACGACTTCTTCAACATGCTCATCAAATGCCAGTCGTCCAGGATAGATGACCAGCGCTGCTCTCCTCCTGAAGGGGGTCCGCGGGCGCCAACCGTCCCAGACGAGGATTTCTTTAGCCTAATCCAGAGAGTTCAGGCCAAGCGAATGGATGAACAGCGTGTGCAGCTGCCGTCTGACGAACAGGAGCCGGATGAAGACGACGGTGAGCCAGGGGCTGCAGACTCCTGAAAAACCTGGGGCCAAATAACACATGCAACGAGGACTGAATGAGAACGGACGCTTGATGGGGAGTGTTTTAGACTGACTATTTCATGAGATGAAGAAACGTGCACAAAGAGACGCATGTGagacataaaaacacaagtGCCATCTCAGTATACGGTGCAGATTTACGCCTTCTGTGCTTTACAGCCAATGATCCATGACGTTTGATAGAGTTCATACTGACTGGAGGAACAGATACCTTGGAAACTACTCTTTGGGCGAATTCACATTTGCAAACACTGCCTGCACTGTTTCAGCACCTAATTAACaacaataattcatttaataaatcgGGCGTAAACGCTGCAAACTAATTTTATAGTTTGGTCTTCTGTTTTTaccaaaatatctaaacaacGGGAGAGCTGATGTACTTTACAGAGACCGTAGAGCATCCAGATGCctaaaaaaagtctgaaatggATCTGAAAGTACAGCCAAACTCCTCCTCAGATtgattttttcatgcatttagcAGGCACTTTTTAACCAGAGTAACTTATAgtaacaaatgaacaaaattaagAGATCGTTCACCCAGAAAGGAAAGtttgctgttaatttactcATTCTCAGGCCATCCCAAGACATGGAGGACTTTTAGCTGAAACCATGGTGATTctcaacattttattctttgtgaattaaaaaaaggcacTACTTAACAATATTTTGAGGTCTTATGAAGCAAAACGGTCGGTCTGTGCAAAAAACTGAACATTAGTTACAGCATTATCAGCTGTAATTCAGAGCCTTAGGCCTGATGTCAAAGCATTCTTCTGaacctgttttttgtttttaaactagtTCACAGCCTGAGCAGCACAGATCTACTCAATCAAAATTCACTTTTGCGTTAATCTTACTATGCATGAACTCATTCAGCGCTCCAGTTCCTCCAACCCTCACTAAACGGAGGAAACTGTTTGTCTTGGACATACATACTGGTGAATTGGCAGAAAAGAATCATGGGGCGTTTGTTCAAAAAGTTAATCTGGGTCAGAACGATGTGAATTTGGATATTCCATGTTTTTTTCCAGGATCAGGAAGCCaatctttattttgtgtcagtttttaaaagcaaagttGAATTGGATCACATTGGAGAAGATACTTTTCCAGATTTCCAAATCTGAAAATTTTACCATTActaaggatttttttaaaacagattacTAGTGATCtaatactaaaaattaaatatttccatCCTTTGTCCCCCAGTTTTTCTGCTTGCCTGAGGCTCGGGATTACGTGCAATAATTTTACGAATAAAGTTCAGTTTGGATTGTTTTACTTCAGAGGCCTCGATGTAATAGTCAAGAGTCACAGGTAGTAATTTTGTGTTGTCCGATATGCTGTTTTTGCCTCAAAGTGACACTAGCCATTCACTTGAATTTATGAATCGTTATGGTTtcagcaaaaaaagtaaatacataaaataaaataaaaatttactttacTGCACTGGTCAAACAAAGCCACCTACATCCTGGATGACCTAAAATGCATTGTGGCGTTTGggggaactatccctttaagctcCACTGATGGTCTGCTTTGTCCAGGCAGTAATAAAGCAGTAGTTAGCTAATAGTATCAAGCAAATGCTGCTGACCTTTGTATCTGGCTATAATAAGCCTCATATCAGCACCAGGTTAAGGTGGATGGAGGGTAGATAATGCGATGCGGTGCTGGTGTTAAGTGAATTCGCCCTGCTGTTTCCCTCGCCAGACTTTCAGATCAAGCTTCTCATTGTCACGTGCTTCTCGTCTATTGCCTTAATTAGACCTGCAGACTCTGATTGTATTCTTTGATATCGTGTTTTCTGAGCTCGTCAGCAGTATTTGGTCCGTGTCCATTGACAGTATTCCCAGTGTCGCACAGCCGCCGCTGTATCTTTCACTTACTTAAATCGCAAGTGCATTTTGGTTCGGCTTTAACCGTTTAGCTGCTGACAGCGCtgtaaaaaactatttctaaacATTAGGGCTGCTTTACGTTCCTATTTGTTTCTTTCGAATTGAAGATGCTGTTGTAACTCCGCAGATGTATTTATTGAAAGTGTTGAGaaatctgtaaaaacaaacaaaaatagacTGTGAAAAGACTTTTTTAAGTGTTGTTAATTTTGGGAGAGTATGTGAATGTGCATAAAAGCTAAATGGAGTTAGCACTTTCATGCTTCACAGTGCTTTGACTGAGTTGACCGAAAGCTTTTAGTTTCTAATTCAAAAAAAGTGATTAGTGAGTTTTCCATAATTGGCTCAGAATCACTGAATCGTGCAAACATCGACCGAGTTACTTTAGTTGGTCGATATTTTAGCCATTTGCGGCTGACTGAACAGCAGAGTAATGCCTCATTGGTGGCAGTTTCATGTAGAAGcattttgaagtcattttaaaatgtgaaccGGCAGTATTTTGGAAGtagaacaatttaaaaaagttttttttttttttgagcaattattattattatagggaATGAAAACAAGTCAATTCACTGCCATATTGTGGTAAAAGAAACTAAGCAAATGCCTCAAAAATGttagatttgttttgttaactCAAGTGTTATGCATTATGTATAATTCCTAAATATTGAAGAAGAaggtacttttatttttcactagttAAAAAACTATTCATATCGATGGATATGTTTTTGACTGATGCATGTATCTAACCCTCATTtctaatattactttattttactacGGTGACCAAACCTTTAGCTCACTGACTGCAGATCAATAATATATAGGAAGTATGTACTAGATTCATAATGGTACGATGTAATGTTGATGAGGTTTAATACGGAgctgtattattaaattattaaacggTATATATTATTTGTCATGGTTTAACTGAAATGATTTATAGTCCATTTGAGTTAACTGTTTTCTCCCTGTGCTATGATTTGCCTTCCATGTACTGTAACAAAATGGTGTGAATAATATGGAGTCtaaaagcctttaaaaagcCACTGCCCCAATGtacataattgttttatatttattttctgttcatGAACATGGGAAAGAATCccttacttttaataaaatgttgataAACTTGA

Function

GO: NA

KEGG:

id description
K15839 GPSM1, AGS3; G-protein signaling modulator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59585 lncRNA downstream 26220 29646617 ~ 29647013 (-) True G40264
TU59464 lncRNA downstream 348159 29323982 ~ 29325074 (-) True LOC122345120
TU59465 lncRNA downstream 348159 29324114 ~ 29325074 (-) False LOC122345120
TU59338 lncRNA downstream 1342757 28326897 ~ 28330476 (-) True G40083
TU59336 lncRNA downstream 1380296 28292726 ~ 28292937 (-) True G40081
TU59589 lncRNA upstream 102568 29801194 ~ 29805802 (-) False G40268
TU59596 lncRNA upstream 102568 29801194 ~ 29805802 (-) True G40268
XR_006250938.1 lncRNA upstream 340828 30039454 ~ 30046148 (-) True LOC122344857
TU59775 lncRNA upstream 344014 30042640 ~ 30042867 (-) False LOC122344857
TU59777 lncRNA upstream 354986 30053612 ~ 30054797 (-) True LOC122345788
XM_043238497.1 mRNA downstream 3048 29661018 ~ 29670185 (-) True ak1
XM_043238498.1 mRNA downstream 6400 29661018 ~ 29666833 (-) False ak1
XM_043239534.1 mRNA downstream 18184 29614719 ~ 29655049 (-) True eng
XM_043239776.1 mRNA downstream 337545 29325983 ~ 29335688 (-) True LOC122345545
XM_043238949.1 mRNA downstream 347118 29324104 ~ 29326115 (-) False LOC122345120
XM_043239186.1 mRNA upstream 140013 29838639 ~ 29846990 (-) True fam78ab
XM_043238807.1 mRNA upstream 160926 29859552 ~ 29880103 (-) True prrc2b
XM_043238808.1 mRNA upstream 162651 29861277 ~ 29880103 (-) False prrc2b
XM_043238632.1 mRNA upstream 212286 29910912 ~ 29919495 (-) True LOC122344958
XM_043238646.1 mRNA upstream 226076 29924702 ~ 29928675 (-) True LOC122344966
XR_006251000.1 other downstream 18172 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 183029 29460585 ~ 29490204 (-) True G40182
TU59335 other downstream 1408529 28255828 ~ 28264704 (-) True G40080
TU59237 other downstream 1777779 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 2274513 27382921 ~ 27398720 (-) True isca1
TU59650 other upstream 227759 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 393323 30091949 ~ 30093513 (-) False rnf170
TU59791 other upstream 393323 30091949 ~ 30093513 (-) False rnf170
TU60232 other upstream 902275 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 906218 30604844 ~ 30613141 (-) False fubp3

Expression Profile