RNA id: XM_043238500.1


Basic Information

Item Value
RNA id XM_043238500.1
length 3266
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122344882
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2052705 ~ 2058733 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGATGAATTGTCTGTGAGCCTCACTGTGCAGCAGGTAGCTGAGCGAATGCAGCAAAAACACACGCTTTCACTCTTCAGTGATGAATGACAGCTCTCCAACATCTGAGAACATCATGTTTCACCAGCTGACTGCAGATGCTCTGAACGGTAGCTGTGACTACACCTTGCCCACGTGTAACAATAGCGCAGGTGAAGCGGCGTTGCAGCTGCCCACTTTTTCCATGGCGGCAAAAGTGAGGGTGATAATTACCTTCACTCTTTGTGCAGTGTCAGCTGTGTGCAACCTCTCCGTGCTGTGGGCTGCCAGCACCAACAACAAGCGCAAGTCTCACGTAAGAATTTTAATCATGAACCTCACCGTCGCCGACCTGCTGGTGACTTTCATCGTGATGCCAGTGGATGCGGCTTGGAACATCACGGTTCAGTGGTTGGCGGGGGATCTGGCTTGCAGATTGCTAATGTTTCTGAAGCTTGTGGCGATGTACTCCTGCGCGTTCGTGACTGTGGTCATAAGCCTGGACAGGCAGTCGGCCATTCTCAACCCTCTGGCCATCAATAAGGCtaagaagaagaacaaaataATGCTGAGCGTGGCCTGGGTGATGAGTGTTGTTCTCTCTGTCCCTCAGATGTTCCTGTTTCACAATGTGACCATCACGGTACCAGCCAATTTCACTCAGTGCACCACACGAGGGAGCTTTGTCAAACACTGGCAGGAGACCATCTACAATATGTTTACTTTCATTTGCCTCTTCCTGATACCTCTGGCCATCATGATCTGCTGTTACACAAGGATCTTGGTGGAGATCTCTCGAAGGATGACCAAAGGAAACATATCGTCAAAGGAAGTCCACTTACGGCGTTCAAACAGCAACATCCCAAAGGCCCGTATGAGGACTTTGAAAATGAGCATAGTCATAGTGACCTCTTTCATAGTTTGCTGGACTCCATACTATTTGCTGGGTCTTTGGTACTGGTTCCTGCCTGAGGATTTAGAAGAGACAGTTTCTCACTCACTTACTCacatactgtttatttttggacTCTTTAATGCGATTCTGGATCCCATCACTTATGGCCTCTTCACTATCCATTTTCGCAAAGGACTGAAGCGCTACTGTCGCAGCGCGGTTGTACTCACAGAGTCAGAGAATAATTCCATCATGACGGGCTCATTGAAATGCTCACCATCCCCATTTCGCATGAAAAGAGTGACCCAGACCGGTCCAGGAGCTGACCCGGAGCAGAATGCGGTGAGTGGGGAAGATAAGAAGCCGGCTGACAGCGAAAGCAAGGAATAGTGGCAACCCTACCAATCCAGCCTTGAAAGTGTCATTTGATTAAAGATACGCATGTGACAAGGCAGGCCTTGTACTGGCTGTCTAGCTGCTCGCAAGAACAATGAGACAACAACACACTCCAGTCTGTTCTCCTCAACAGCGCTAGACGGATTCCAGTTGAGCCCAAGCGTGTCACATCTTTTGATTCGTTCGCTGATGAGCTGCCTcaattacttatatttaatacCCATCCATTTCCCTGACACAGGTAATTAAGCTTTGTAATCATTTGCTCTTTACTAACTACGCCAATCACACTGTAGATTAATTAGACTGTTTATAATTGTGGCTTTtgttgaaaatgtcatttacatcAAGGGCTTTTTACATCTCATCTGCAGCATCTCCACCTGCTATCACAAAGGGCATCGCTCTTGAATAGCTGAAGAAATTAGATTCATCTACAAACAGATAAGATGTGTGGATTTACCGTTTTGAGATATTACAAATGCAAATTCGTGTACACTGGTTCTTGAATAATTGTCTTGTGTTAATTGGAAGCGTTCAGTCACACCTTTTGAGGAACCCTTGAGATGCTATcgtttattgactttttttctggGATGGATTTAGACAAAAATTAACTATCCCCAGTAGATATCGCATTGCGCTAGTATTACTGGGCAGCCTGAACCCATTAGAATATGCGTTTATGGTGTATTCACGTACATTGTTTTGTATGTTTGGATGTAGGCTGAAATGTACAATATGAATGTATCAGCaacatctaaaatataaacgtTTTAACACTATATACAAAGGATtcataatgtatattttgtaactATACATATTTTTGAAGCCCACTCCTACCCTAATGCTAACCAACAATTTACAGAACAAAAGTACAGAACAGCACCAGAAATATCTAAAAAGGATTTTAgggtctttttttaatatgatatttttgcAGTACTTTGATAATGTACGTTTGAGTGTCTATTCAAACAtacttaaatatgcatgtgcGCTAGAACCATGCTTTACATTACGAATACCAACAAACTTATGAAGTGACACTGCACTGAGGCCAACACCATACCGTACGACAAActatttagctttaaaatgatatttgatTGCTCATGAATGTGTTTACATCATACTTCTCAGGGAAGGTGCTTCTTTTGTCACAGGGTACTGAAGTCCAACTGGAGACTGACAAACTGTAAAGCTTTCCTCATTTTAGTGTCAGGTGAATACTATCATTTCTGTTGACGTGACGTTACGTGTTCTGACAGTGCTCTATAATCAGCAGAACCATGATCAATGCCGTGTGCTCGAATGTTTCTGAAAGAGTCACGTGACATCCAACAGTTGTGCTTCTTGTGTTTGCCATGTCACTACAGGATGTACTTAGGCCTTAATGACCTAGATTTTCAACTTCAGTAAATGGAATAGCCCTGCGAGAAAGTGTACCGAGGAGGAAAATGAAAGGGGGGTCCTATCAGTCAATCTTTCATGGGTGAagggaaaatatatttatgcatacacAGTATCCGGTCATTACTGTAAGTGAACTGCGGCTGCACTTTAATGTTCTCAGACGGAAACATTAGTACACATTGTTGCTACAACTGTGCCTGGTGCAATAgggcttaaaatgtatttacgtATTTTCTCATTCTatccatatatatgtatttgctgAAGAGAAGGATTAAGAGATTACATGGAGCAAAAACATTGCTGCATCATGGTGTGAATATGATATGGTATTTATATGAACTGTTGACATTAATCTAAAGAGGTGACAGTGTTAAAAaccttatttaaatgcatgatgccaatgtgtttatgaaaagaagaaaggtaaagcttttcttttctcttgttGTGCATGGCGATGATATTGTATTGCGTGTCCTTACATTGTTTGTTCTGGGTTACGTGGAGCAGTAATAAACGTATGTTAATTTAGaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48158 lncRNA downstream 22212 2017378 ~ 2030493 (-) True G32688
TU48148 lncRNA downstream 52248 1999885 ~ 2000457 (-) True G32682
TU48146 lncRNA downstream 55862 1996311 ~ 1996843 (-) True G32681
TU48147 lncRNA downstream 55969 1996276 ~ 1996736 (-) False G32681
TU48138 lncRNA downstream 86173 1966329 ~ 1966532 (-) True G32675
TU48176 lncRNA upstream 164612 2223345 ~ 2224056 (-) True G32701
TU48178 lncRNA upstream 184934 2243667 ~ 2243883 (-) True G32703
TU48187 lncRNA upstream 210087 2268820 ~ 2269330 (-) True G32707
XR_006251091.1 lncRNA upstream 297233 2355966 ~ 2356780 (-) True LOC122346102
TU48218 lncRNA upstream 315269 2374002 ~ 2375663 (-) True G32727
XM_043238158.1 mRNA downstream 29783 2020096 ~ 2022922 (-) True LOC122344636
XM_043238324.1 mRNA downstream 154115 1893780 ~ 1898590 (-) True LOC122344761
XM_043239640.1 mRNA downstream 267316 1780165 ~ 1785389 (-) True ube2l3b
XM_043240861.1 mRNA downstream 280913 1769436 ~ 1771792 (-) True sdf2l1
XM_043238199.1 mRNA downstream 307009 1733099 ~ 1745696 (-) True top3b
XM_043240718.1 mRNA upstream 29052 2087785 ~ 2090156 (-) True LOC122346063
XM_043240213.1 mRNA upstream 31419 2090152 ~ 2099181 (-) True LOC122345768
XM_043240773.1 mRNA upstream 326418 2385151 ~ 2418053 (-) True LOC122346100
XM_043239484.1 mRNA upstream 465826 2524559 ~ 2527337 (-) True purba
XM_043240699.1 mRNA upstream 477292 2536025 ~ 2543574 (-) True zgc:65851
TU48163 other downstream 29811 2020108 ~ 2022894 (-) False LOC122344636
TU48139 other downstream 84957 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 84957 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 358731 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 698291 1342606 ~ 1354414 (-) False lrrc74b
TU48378 other upstream 437771 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 521815 2580548 ~ 2585426 (-) False snrnp27
XR_006250982.1 other upstream 528820 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 877010 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 892729 2951462 ~ 2960177 (-) True G32908

Expression Profile