RNA id: XM_043238505.1


Basic Information

Item Value
RNA id XM_043238505.1
length 2101
RNA type mRNA
GC content 0.47
exon number 6
gene id pik3ip1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12532379 ~ 12539820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTACCAGCTCTCCGCTCAAAACAACAGCACGACGGCGGTGTGTGTGGAGAGCAGTGTGGCTCGTTTTACCACAGGCTCTTCCAATTAAACCCATCGTTTTCTTTTCTATTCGTCatataagtaataattaaaaaaagactactTCTTGTTGTTAACAGCATCGACGAATGAAGATGTTTCAACTGCTGTACTTTGGGTTTGTGCTGAGCTCTGGTTTGGTGGACTGTTGGTCTGTTGTTGAAGAGTGTATTACGTCTAATGGAGAAGACTATAGGGGAATTCAACAGAAGACATCCACAGGGAATATCTGCCTCAATTGGAAGAGTCTAAACTCGCAGACAGATGTTGGAGATCACAATTTCTGTCGCAACCCAGATGGTTCAGAGAAGCCCTGGTGCTATGTGTCCGCATCCGATGGAGCGTCCAGAAAAGAAGCGTGTGATATTAGGACATGCCAAGACCAAAACTCCACAGAAGCCACGGCTCCAGAAGAGTCGGCCCCCACTCAGGGACTCACCCCAAGGATGGTGGAGACCTTCGAAAACGCAGACTCCTTCCCCTCGCAGGTGGAGGGTGCGGCGGTGCAGCCCGTGAAGGGAGTCCGACAGCAGGTCAGGAGTGGACCCAAGAGGAAGAAAGACCTCGGGACTCTCGGTTATGTTCTGGCCGTCTTCATGATGGCCATTATCATCCTACTTGGGGGCGGCATCACGATGGGATACTTCTACAAACGGGGTCGTGACCTCAAGAAACAGCACGAGCAGCGGGTTTACGAGCGTGAGATGCATCGCATCACTCTTCCTCTCTCAGCCTTTGCCAACCCCACCTGCGAGCTGGTGGACGAGAACACCATCGTCATCATGGCTGAACCAAACAACCAGACCCCCACCCAGGAGCCCGTCGAGGGGGCTGACCCCCTCATGGGAACAGCAGGGACCCCCGGAGCCTGATGGAGGAGCAGGATGAGCTTCTGGAAAAGCGTCTTGTTAAGACATGTCTATGCAGCATTGCAGAATCTCAGAGGACCAAACCCCACATCCACCTTCCCTCTGCCTGTCGTCTCTTTTCTCTTTACCTTGCCTTTACAGCACGGCCTCACAGTAAAGGTAGGGCATATGCCTCGAGAGAGCGgtggaaagcttttttttttctttgtcccaGACAGCGTCCTTATTTTCTCAACAAAGTTGTTGGGGAAAGTGGGACATGTGGGGGGATACACTGGAAAAGGTGAAATGGTGgttttgtataaatatgcatgtcAGGGATTCGTGTGGAGAGAAGTGGCAAGTATGTTTTGTGAACATCATCACAAGGGCATGAACTTTCCCCGCTTGTTAAACTCCCAACGAGACGGCAAACGGTCCAGTAAACTGCTTCGTGTCCTCTTATGAATCGTCGATGGATCAGATCATCTGAAGTTCTGGGGTCCCGAAAGAGAAGACAATCCATTCTTATCTTCTTTCCTgccttttctgttgtttttgttcctaATGCAGTTGTGGTGGAGAGTTGAGACTGAAATTGTACATGTGTATCTGAATACGTTGCTCTACAGCTGGGCTGTTTATTCTGTGAGGAGCTTTGGTTAGCAACTAGAGCTAATTGAATTAATTGCCTTTGATGGCTCTTTCCCAGAAATCCATATTCATTAGGCAGATTCTGTGGCCTGGGATGCTAGAGCTAAGCTAGGTGAAGGTTTTCAATAAATGAAGACGAAAGCTTTCCAGAgtaaaatgcttttgaatgtaTTGTTTCTTCTATGGCCACAATCTGATAAAGAGCGAGGACATGGAGAGTGACAGAGAGTGTCTGATTAGCGGTCTCTGGTTACGTTTTCTGTATGTGTTCATTTGCTCCTGGCCATATAGATGGTCTGAAACAGGACGATGTAGTTTGAAGCATGAACACGAAACGGAGATCGTTCGAGATGATGTATTAAAAATCATGTACTATGGTTTCATTTTACAGAGATGGGATATTgatgtatgcatttgttttccCACGGTTGATTGTACAGCTGATTAAGGTTCTGGCGgatcttgtatttttatttttagcggTTTTTACtgctgtgaaataaaatgagtttgAAGGAA

Function

GO:

id name namespace
GO:0043553 negative regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52651 lncRNA upstream 173581 12356438 ~ 12358798 (+) True G35756
TU52630 lncRNA upstream 245001 12285693 ~ 12287378 (+) True LOC122345282
XR_006250984.1 lncRNA upstream 247257 12284445 ~ 12285122 (+) True LOC122345281
TU52639 lncRNA upstream 248630 12279235 ~ 12283749 (+) False LOC122345282
XR_006250985.1 lncRNA upstream 252396 12278130 ~ 12279983 (+) False LOC122345282
TU52820 lncRNA downstream 8846 12548666 ~ 12551180 (+) True G35855
TU52802 lncRNA downstream 27364 12567184 ~ 12672206 (+) True G35843
TU52838 lncRNA downstream 100447 12640267 ~ 12641645 (+) True G35864
XR_006251058.1 lncRNA downstream 105464 12645284 ~ 12647088 (+) True LOC122345920
TU52801 lncRNA downstream 110201 12650021 ~ 12653283 (+) False G35843
XM_043240357.1 mRNA upstream 3589 12514013 ~ 12528790 (+) True si:ch211-225b11.4
XM_043240359.1 mRNA upstream 3589 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240360.1 mRNA upstream 3589 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240358.1 mRNA upstream 3589 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240023.1 mRNA upstream 22371 12457911 ~ 12510008 (+) False camk2b1
XM_043238703.1 mRNA downstream 24372 12564192 ~ 12579711 (+) True si:ch211-225b11.1
XM_043239476.1 mRNA downstream 55457 12595277 ~ 12639274 (+) True wscd2
XM_043239477.1 mRNA downstream 55457 12595277 ~ 12639274 (+) False wscd2
XM_043239230.1 mRNA downstream 140861 12680681 ~ 12683727 (+) True ficd
XM_043238274.1 mRNA downstream 163532 12703352 ~ 12705245 (+) True iscu
TU52818 other upstream 16271 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 276707 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 276707 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 590307 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1470065 11046480 ~ 11062314 (+) False map7d2a
TU52846 other downstream 163551 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 264132 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1444277 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1750600 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1760223 14300043 ~ 14305304 (+) True LOC122345142

Expression Profile