RNA id: XM_043238507.1


Basic Information

Item Value
RNA id XM_043238507.1
length 1548
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC122344888
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14057263 ~ 14059780 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAAGtgcaaaagagaaaataaaagaaaatcagcACCACAGCTATTTTTTCAGCTTCAGCGCTTGTGATATATGATTCTAAGAACTATGCATGTGCAGTTATAAAGTGCTTGTGAGCGTGATGGAGCTTCAGCAGCATTTTCCTGTGTCCGTGAATGATTATGAAGAAAATGAAGGAAATGCAGAGAAGAGGGAGaaaaatgatgcttttaaaACAGAAGATCTTTATCAAAGTCTTCAGTTCCCACCTACTGCACACCATGGAACTACTGACAGCACGACCCTGCTCTCAAAACGCTGTGAAAGAAAGTACGTGTTTTTACTGTTTGCTGTGAACGCTTTTATCTCAGCCATCATCCTTGTCATTGTGGGCTTAAACTACTCTCACAACAGAGAAACACAACcaataaaaggacaaaaagAATTGTGGCTTCTCCATgacaatgtgttttatttgttctggAGTAAGCAGAGTGATTGCGGCTCTGCTGAGAGCTTCTGTTCTGAGAGGAATGCCAGCCTGGCCATTTTAACTGAGCATAACAAGGCCTGGTTGATGTCCAGAACCAATGGAAAGCAATTTTTAGTCTTGAGAGCCTCATCAGATGGATCCGGAGGCACTGCTTCTGCACCAGTGctgccttctcacctgtggctcgtTAGCTCCTTAATTGCTCCCCCTACTTAAGctccctttgtttgcagtcttgtgtctgatcGTTGTGGTGTGAGGATGCTACCAGTGtctccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtccagtcctgTCCAGTCCTGTccagtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtctgtCTAGGCTCCAAGTTCAGctggtattttttttagttttttcctcttcgttcgctctgcctttttgttgtttttttttccagacctCCGAACCCCTGTGCCGGGCCTGGTTCCTCCGGTGCAGTGTTTGGCAGTTCGCTCTCACCTGATCCGCTGGATCTGATGTTGGACTCGAGCAGCAGGACTGTAGAAAGAGACTCTATCAAGTTTCCCGGTTTTTGCTCCCAGCCTAAGAGGAGTGACTGGAggctgttttgagtttttcttcGGACGTTTTCTGTTCCTCCGCTCCGGTCAAGTTTTTGTTCCATGTCTACTAATAAACTAAGTTGAACCTGCAATTGAATCCGTGTTCGTTCCTGACAGACTGTGGCATTTTGGCTGAGGATGTTAACACAGGACATGGAGAAGgatttgtgtgtgagaggatagtcaaaaataattgattttgatGACTTTTGAAGCTGCAAAGGATGTACTGGACAGCTCCTTGGCTCAAAGTTCACCCTCCAGCATGTATATGAGTTGTACttcatttatcatgttttttttaatgaataaatctcTTCTTTGTAACTACTAGACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53675 lncRNA upstream 9769 14046777 ~ 14047494 (+) True G36420
TU53657 lncRNA upstream 49861 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 53732 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 56926 13999100 ~ 14000337 (+) True G36405
TU53521 lncRNA upstream 82504 13974532 ~ 13974759 (+) True G36332
TU53795 lncRNA downstream 261776 14321556 ~ 14322681 (+) False G36503
TU53796 lncRNA downstream 264571 14324351 ~ 14326754 (+) True G36503
TU53787 lncRNA downstream 273288 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 273288 14333068 ~ 14337765 (+) True LOC122345214
TU53801 lncRNA downstream 282143 14341923 ~ 14342507 (+) True G36507
XM_043238796.1 mRNA upstream 16204 14038970 ~ 14041059 (+) True apoa1a
XM_043238797.1 mRNA upstream 20094 14033447 ~ 14037169 (+) True pafah1b2
XM_043239652.1 mRNA upstream 42887 14010323 ~ 14014376 (+) True tmprss4b
XM_043238331.1 mRNA upstream 71557 13984369 ~ 13985706 (+) False ins
XM_043238328.1 mRNA upstream 73535 13978210 ~ 13983728 (+) True panx1b
XM_043239092.1 mRNA downstream 28651 14088431 ~ 14092482 (+) True si:ch211-284e13.5
XM_043239093.1 mRNA downstream 64329 14124109 ~ 14130049 (+) True hsd20b2
XM_043240389.1 mRNA downstream 86189 14145969 ~ 14156534 (+) True gnb2
XM_043240387.1 mRNA downstream 86189 14145969 ~ 14156534 (+) False gnb2
XM_043240388.1 mRNA downstream 86190 14145970 ~ 14156534 (+) False gnb2
TU53623 other upstream 71557 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1250047 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1352022 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1541155 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52594 other upstream 1801591 12249138 ~ 12255672 (+) False G35720
TU53776 other downstream 230640 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 240263 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 240263 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 587709 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 658752 14718532 ~ 14720487 (+) True G36640

Expression Profile