RNA id: XM_043238511.1


Basic Information

Item Value
RNA id XM_043238511.1
length 2332
RNA type mRNA
GC content 0.52
exon number 3
gene id nalf2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13334755 ~ 13338138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttaactattatttttacttcagtagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatttttttaaggATGGAAATGACCGGAGGACGTTTAGTCTATATATTTCCTCACGCACACTGCCCCTCCACGCTCGTAACCGGGATCTGTGTGTCTAGCCGAGCAAGGCGAGCGGGGTGATTCCTCGCGGGGTGGGGTGGGCAACAATGCGCGCTGCTGAACTGAATGGTGAGCGCATAGTGAATGAAGTTTCAATGGAGGAGGCAAGGATACGCGCGACAGCGCACGCGCCACACCCCCGCCTTCAATTAAAACATCTCAGGGTTCGTCTGAGTGCGAGCGAAGATGGCGACAGAGTGAAGGAGACCACGGAAAGATGACAAGCCCcctacagacagacaaacacgcACGAGCTCTTCGCCCCGCCGCCTCAGAGATGCCCGTGAATGAGTAAGAAGCGGCTGCGTACGATGTGTTGTCAAGGAGATGCGGGGTAGGTGATGGAGTCTCGCGGCATGTGCTTTATCATGCACTGTCTCGGTAATTTAGACGCAGGTGTTTGCAGTGCGGCTTGATTTTGAGCAGCAGGTGAAAGGGACGCTTCGAGCCATCATGTAAACGTCGCGGTGGGGAATATTGCGGAGGAGACCCGCCCGTGTGAGCTCGCGCTTTGTCTCCCCCTCTAAAATATGATCACGGGCGCCTGGCGCTGTGGAAGGAAACTTGACGCCGAGTTAGAAATCTGCCGCGTTACCGAATCCATCGACAAACCGTGCGCGGAGCCGGAGAAGGTGCAGAGATGGCGCATGAGCCTCGCGTCGCTGCTCTTTTTCACGGCGTTGCTGTCAGATCACCTCTGGCTCTGCGCGGGAGGCAAGCTCCGCTCGAGAGACCGGACTCACCGGAGGACGTGGAGCAACGCGAGTCACGACGCCCAGACGGGCCTTCGCGATGAGGACTGCGGGGTTCTTTTGAGCAATCTGACGGAAAACGGGCCAAAGTGCGTGGAGGCTGACGCGCGACGTCGCGCGCCTCTGGAGTCCGCTTGCTCCACTCTTTACCGGCAAAAGAGCGGCTTGGTGAGCTCCTCCTATTCTGTGCCGGTGCCCACGGTGTCGCCACACGCGTTTTTGGAGTACTTCCGGAACTTGAGCTTGTCATTTTGCGACGCGCTCACAATAGCGGACCTACTAGAGAGCATGACCGGTCCTGACGGGCTCAACTGCAGTCTGAAGCGTGTCATTCGTGACCTGTTCAGCGGCGGACCGGAGGACGGGGACCTGTGCAGCGCTTGTGTTCACGCGTACATCCGACTCGACCAACACGCTCAGGAAAAATATGAGGAGTTTCAAGTCCTTACGCGCAAATTCATGGCGGATGACTACTCAGTGCGCGCGCAAACACACCTGTGTCAGGCAGTGTACAAAGCCTGGCTCTGTGCAGAATATTTTCCGGTTCCTCAGCGGCAGTGTGTGAGGTGGCTTCCGTGCAGACACTACTGCGGTGAGGTCACAGCCAGCTGCCCCTTCATCTTACCTGACAATGACCACCTGCTGTATGCCGGTCTGCCGAGCTTTCTCTGTGCAGGGTTTCACGAAGAGTACTTGACCAATCAGGGTCCAGACTGCTGTGATGTCAGATGGAGTGGGTGTGACTCTACTGTCGGCGCCGCATGTGCTCTGACACGCCTCCCCGGCTCCTTCTCTTTGAATAGGAGGTTATCATCAGGAGCGCTGTCATGTACAAATCGTCTTCATGGCAGTAAATTGAAACTGTGTGTGCTTGTTCTCTTCTTACTACACACTGTTATCTCCATAACAACATTGCAGCATTGCAGCACCGGCTCTTTGGAGGCAATAGTACCTCTAGAAGATGTTCCCATGAGAGAAGAGTAAAAGACTGGAACATCTCCCTCTTTATTGGAAGACACACACGCGGTGAAAGCGTTTTTGTCTGCTGTGCATGAGACGAACCAAATGCCTGGAAAACACAGGAAGTCTTGCCACCGCTGAAGCGCCTGTGCCTGTCTTTTTCGAGGGTTTGAACACCTGGCTTGATATGAgcgtgcatgtttgtgtgagtgagcgagcgagcgagcaaGTGAGTAagtgaatgaatgtttttacctgtttttcagtgtttcatttgttttatctgGACTAACTGCACATGTTAAAacccttgttttgttttagacaACATTCCTCGAAACAAAAACTAATGTACGAAGAATGAATGACATTGTTACATTTCTCCTCTAATAAAACCGACTCTATTGgagacatttttcata

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53205 lncRNA upstream 10372 13324033 ~ 13324383 (+) True G36109
XR_006251001.1 lncRNA upstream 22103 13299755 ~ 13312652 (+) True LOC122345423
TU53198 lncRNA upstream 22370 13312061 ~ 13312385 (+) False LOC122345423
TU53187 lncRNA upstream 23063 13299809 ~ 13311692 (+) False LOC122345423
TU53143 lncRNA upstream 225902 13108632 ~ 13108853 (+) True G36062
TU53255 lncRNA downstream 181835 13519973 ~ 13521608 (+) True G36140
TU53263 lncRNA downstream 228839 13566977 ~ 13580798 (+) True G36141
TU53304 lncRNA downstream 309788 13647926 ~ 13648538 (+) True G36168
TU53333 lncRNA downstream 382647 13720785 ~ 13721566 (+) True G36191
TU53340 lncRNA downstream 393831 13731969 ~ 13732456 (+) True G36198
XM_043238327.1 mRNA upstream 177518 13151621 ~ 13157237 (+) True steep1
XM_043239729.1 mRNA upstream 227183 13066436 ~ 13107572 (+) False stard8
XM_043239728.1 mRNA upstream 227183 13069355 ~ 13107572 (+) False stard8
XM_043239727.1 mRNA upstream 227183 13069356 ~ 13107572 (+) True stard8
XM_043239730.1 mRNA upstream 227183 13076369 ~ 13107572 (+) False stard8
XM_043240760.1 mRNA downstream 4008 13342146 ~ 13372469 (+) False eda
XM_043240759.1 mRNA downstream 4011 13342149 ~ 13372469 (+) True eda
XM_043240761.1 mRNA downstream 4011 13342149 ~ 13372469 (+) False eda
XM_043238676.1 mRNA downstream 38399 13376537 ~ 13379768 (+) True wnt11f2
XM_043240075.1 mRNA downstream 45074 13383212 ~ 13387955 (+) True igbp1
XR_006251084.1 other upstream 527539 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 629514 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 818647 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1079083 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 645959 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 952282 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 961905 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 961905 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1309351 14647489 ~ 14651911 (+) False fgf5

Expression Profile