RNA id: XM_043238516.1


Basic Information

Item Value
RNA id XM_043238516.1
length 2221
RNA type mRNA
GC content 0.41
exon number 6
gene id ube2g1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7993298 ~ 7999994 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCGCATGCGCACACCGGAGCAGAATGTTGAGCAAAACGGACTAGAGCAGAAACGGAAAGACGCGCAAGCaaattcaaacatattttttctttagcGAAGTGAACAACTGTCGACCTAGAATATAacttattaaaaacatgacGGAGCCCCAGTCAGCACTGTTACTCAGGAGACAGCTAGCAGaactgaataaaaatcctGTGGAAGGTTTTTCAGCTGGTTTAATAGATGATAACGACCTCTACAGATGGGAAGTACTAATAATCGGCCCTCCAGATACACTTTATGAGGGTGGTGTTTTTAAAGCCCATCTTACGTTTCCCAAAGACTATCCTCTCAGGCCTCCTAAAATGAAGTTCATAACAGAAATATGGCATCCAAATGTTGACAAAAATGGTGATGTATGTATTTCGATATTACACGAGCCGGGGGAGGATAAATATGGTTATGAGAAACCAGAAGAGCGCTGGCTCCCCATTCACACCGTAGAGACCATCATGATTAGCGTCATCTCAATGCTAGCTGACCCCAATGGAGATTCCCCTGCCAATGTTGATGCAGCAaAAGAGTGGCGGGAAGACAGACATGGtgaattcaaaagaaaagttgCCCGCTGTGTAAGAAAGAGCCAAGAGACTGCCTTCGAGTGATATTCATCTAGCAGCTTGTAGCTTCACTATTTTCAGGGTCTCCAGTTGAGAAACAACATGGCACTGTTTTCTTGCACTCTACCACCCTATTGCTGGACTGGTTTTCATTGAATGTTGGCAGTAACAGACTGGCATTAATAGGCTGCAATAGAACATAAGGCCATCACAGATGCTGACAGAACACGCCAAGCAAGTGccaacaaaaagaagaaaaaacctaaacaattatgctctttttttttttttttttttttttttttttttttttcttcttttttttttccaagtctaCGAACTGATTCAAATTTTCAGGAAGAGATTGTAAAGATGTGTACATAGCACAGACATAAAAACcggataatatataataacttgTTCCTGTCCATCCAGCAAGACTTAGTACCAAATAAAATAGCAGTTCTGTAGTTAGAGTGTGACATCATGTAAAGTTCTTGAAGACTATAGTTCATCTCCCACCCTCCCGCTCTGGCTGCCTCGCATCTAGTGTGCATCAGATCCGTTACAGGTGCAAGTGGCCTCACGTACCCACTTGTCAGTGTGAACAAAAGTCTGCTTTGGCATTTCTCACTCGAACTCGATCCAGTTTTAGGGTGGGGAAGGCAGGGGTAAGCTATCGATAGGATTCAAAGCATGCTCGTCATGATGGAAGGCTTTCTCAATCGGGACACTTCAGGTAAAATAGCTGTAAAGCACGgtcattttcttattaattagGGGTCATGAAGGTATTTCTCTGATTTGGTTTTAAATGGGGTGGGCGGGGGGAAGGGGAGTGCTCTTATTTTGGCTTGAAAGGATGACTGCATTCTGAGTGTCAGGTTCTCATCTCTTCTCTTTTGTCGTCCATTTGAGGCAGGGAGGCAATGGCAAGGAAACCCATCAGATgtgattcttcttttttttctgcatgttttaagttctcttttgttttcaaaagtgCCTCCAGTTTAAACCGCTTGGCTTACGTGCCCTGCATCAAACAGGAGCTAAAGGGAGGAACGCGTTTAAGAACTGCTCAACATCCTCTCGAGCTTGTGTGAATGtgaggtttatttttattttttttttcataacccTTGTACCAGCATTATTTTGGTGTAGCAATAACTCTGCTTTGCCCACATAATGTGTGGACGTATTCAAATTGGATATTGGTGTGCGATTTCTAGTAAAGATTCTCCCTTGTATCagagcagattttttttttgtgggctTGACACCTCTTTTGTGTGGTTTCTTTGATAGGTTTCTTAGCCATGCTTTAAATGTAGATTTCTTGCAAACAGTTACTGGGATTTCagatgaggtgtgtgtgtgtgtgtgtgtgagattaaGGGTGATTGagcagaggtgtgtgtgtgtgcatgcctgTATCCCACTCTCTCCTCCCACAATCTTTAATTCTCTGGTTAATTTTATTCTGGCTCTGACAGACTACTGCAGTTCTTTTGCCTAATGTACAAAGACAAAATACCGatgtatatttttcatgttatggAAATTGTCACCTCTAGTGAGTtcttctaaaatataatttttttccaata

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10575 UBE2G1, UBC7; ubiquitin-conjugating enzyme E2 G1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50482 lncRNA downstream 55927 7936511 ~ 7937371 (-) True G34265
TU50476 lncRNA downstream 131469 7861475 ~ 7861829 (-) True G34260
TU50441 lncRNA downstream 233133 7717573 ~ 7760165 (-) True G34231
TU50461 lncRNA downstream 280804 7712043 ~ 7712494 (-) True G34248
TU50458 lncRNA downstream 283075 7709905 ~ 7710223 (-) False LOC122345606
TU50497 lncRNA upstream 13353 8013347 ~ 8013551 (-) True G34275
TU50498 lncRNA upstream 13692 8013686 ~ 8013937 (-) True G34276
TU50512 lncRNA upstream 100492 8100486 ~ 8100700 (-) True G34290
TU50532 lncRNA upstream 160883 8160877 ~ 8161776 (-) False si:ch211-117m20.4
TU50548 lncRNA upstream 197474 8197468 ~ 8260129 (-) True G34314
XM_043238512.1 mRNA downstream 768 7976647 ~ 7992530 (-) True ankfy1
XM_043238615.1 mRNA downstream 19737 7938171 ~ 7973561 (-) True zzef1
XM_043238852.1 mRNA downstream 81324 7865137 ~ 7911974 (-) True atp2a3
XM_043238850.1 mRNA downstream 81325 7865137 ~ 7911973 (-) False atp2a3
XM_043239910.1 mRNA downstream 163533 7794750 ~ 7829765 (-) True camkk1a
XM_043238275.1 mRNA upstream 102591 8102585 ~ 8108024 (-) True ruvbl2
XM_043238139.1 mRNA upstream 108721 8108715 ~ 8114097 (-) True ftr83
XM_043238140.1 mRNA upstream 109581 8109575 ~ 8114097 (-) False ftr83
XM_043238142.1 mRNA upstream 109584 8109578 ~ 8114097 (-) False ftr83
XM_043240863.1 mRNA upstream 129127 8129121 ~ 8131172 (-) True atp5l
TU50440 other downstream 271835 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 596145 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 870834 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 871449 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1050095 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 411888 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 429706 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 674555 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 929476 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1215514 9215508 ~ 9220507 (-) False vamp5

Expression Profile