RNA id: XM_043238534.1


Basic Information

Item Value
RNA id XM_043238534.1
length 2850
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC122344907
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30765631 ~ 30769907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAAAACcatgacatgcacacacagctgCATCCTGGGCATCCGGCGGTGAAGAGATAAACACTCTAGAATCAGTTTAACTCTGTTTCAGTCGAGCCTAAACCTGCTTCTCCTCCCGAGCTGACTGGAGAAGGACGGTGAAAGTCTTCTGGGAAGTGCAGAAATTAAACACCATGGATGACAAGCAGCCAGGTCTTCCACCACGCAGACCAACTCTGATTAATAGAGGTTCTCCTAAACGATTCTGTCtaaacacagagaaaagagtGCTTGATGAATACGGGAAAGTCCAAAAGTGGACTTACGGCGTAAAAGACACCAGCAGGCAAAGCAAAATTGTTCTGCTGGTGGGAGAGACGGGCGCTGGCAAGACGACTCTCATCAACACCATGGTCAACTACATACTGGAAGTGAGGTTTGAGGACGAAATCTGGTATGAAATCACAGCAGAAGACGCCAGAGACCAAACAGAATCCCAAACCTCCGAAATCACCATGTATGAGGTCTTCCCGCGAAAAGAGCCGGTATCTCTCACCGTCATCGATACCCCAGGATACGGAGACACTAGAGGGCTGGAAAAAGACATGGAAGTGGCTGAGAACTTGGCCGTTCTGTTCCAGAGCAACGACGGAGTTCGCGAAATTGACGCCGTGTGTTTCGTGATCCAGGCGTCCAAGAATCGTCTTTCAGACAGACAGCATTACGTTATCAGTTCAGTCCTGTCTTTGTTCGGAAAAGACATCGTGAACAACATCGTGTTTTTAATCACGCACGCCGACGGCATGGAACCCAAAAACGTCCTCGGCGCTATTCACAAAGCCAGAATCCCCTGCAGACGGGACAAACACGGCCAAcctgtttatttcttattcaaCAACCGGCAAGCCGATGACCGGCAAACCGAGAGACGCTTCAGCCGTGTTCAAAGAAGAGCTTGGGAAGACAGCATGGACGACATGAAGCATTTCCTTCGGTCTCTGGACATAAAGAACAGAAGAAGCTTAGAGCTGACTTCGCACGTCCTGATTCAGAGAATTCGATTCGGAGCGTTCATCTCTAACCTACAGCTGCAAATTCAAGAGATGGAGCTGAAAAAGGCGGAAAAGGTGCAGATTCAAGAGGCAAtgatacaaaacaagaaaaagatcGACGAGTGCAAGAACTTCACCTTTATGCTCAAAAAGACGGTGAAGCTGAAGGTGCCCACTGAGAGCGCGTCGTGGAAGAACAGGAAGGCGACGACCTGCACCGTCTGCGAGGAAAACTGCCACGAGTTTGGCTGCTGGTGGGCCTCGGGTCCCAGCCGCTGCGAAGTCATGAAAAACGGCTTCTGCACCGTGTGCACGCGCAGGTGCCACCACAGCCAGCACGTCAAACAAAACCACAAGTACATCCTCAAACACTCCAGCATAAAAGTGGAATTCGACAACTTCCTACGAAAATTCGAAAGAGCCGAAAAGAACTCCGAGACGTTTTCGGTCTTGAAGGACAGGCTCGACAAGGACCTGCAGGGGATCGAGGACCAGATCATGATTCTTCTGTTCAACGCTTACAGGACCATCAGGCAGCTGTCCGAGATCGCATTAAAACCGGACTCCGCTTTCACTCTTAAGCATCTGGACTTCTTCATCCCCAGAGTGAAGGAGGCAGGGAAAGAAAACTGGGTCCGAGAGCTGGAGGAGATGAGGAGGAGCGCCGAAGCTGAAGAATCAAATAAAGATGCTCTGAGTTATCTTCAGGCGGGGATGGCACATCTAGCGGTCGGCAAAGAACAAGAGCACACAGGACGGCTGATGAACCAGGAATAATGAAGAAAACAGTTTGCAAtgagaaataaatgcatctgaAGATAACGTTCATGCATTCAAGAGTTTGCGTTTATGACAAACTCTTGAATGTTGGTTCATGTAATTCAATTCTGTAAAATAATCTGTGTACTAGACGGTAGCTTTAATGTAAAAGGTCACAACTTcaaacacaattttcattttttcatcagTCCTACatacttttacatttctattattaCCGGCTGTCTGCTCGTCGGTCTCTGTGGCGCTCGTCTTAAACTcttgtcaaataaaaacattgcgcTCTGCAAAGGTCTCACGTTCTTTTGAGTTCACTTACAATGCACCAAGAAATCCAGGTTCTGTGTTCGGTCTTTCGTTCCACCAAGAAACCTTTCGTCACAAAGAATCAGGTTTTGCAAGCTAATGCAGTGTTGCTCTTAGAAATGCAAAACCTTCACAACCTCCGCGAATGTTGtattatacagaaataaattcgACTCGGCTCATACGCACGTctacattttaaacagaaatgcaaGGGGGTTAGATATTTAATTTCTCAAAACACTGAGATTTAAAGCAAACGAACGATTTGACGCATGATAACGGTGAATTTAAACGGCTGTGTTTGCCAAATTAAACAAGTGTCGTTAGTTTAGAACTGTGTGTAGAGTTTTGCAGATCGGTCTCAGGATCAGACACGAGTGGATGTTTTTCTTTGCGCTGTGGTTTTTCAGAGAAACCATTTGATTTGTTCCGCTGCCTGCAGAAAGGAAACGAAACCAATTCGGTCTTCATATGCAATTTTGCCCTTAGTCacatttacgtttatttttttgattaatcCCACCTAATGTTAAAGtctttaaatatgctttttatattgcaataatttcacattcaatctTCAAATTAAGGTAGAAACAACCATTAAATGAGTCAGAAAGGCATGACACACATAAGAGAGTATAATGCAGacacagaacaaaaaacacagaaaattaaatcatgcactatacagtaaaagtaatataataatgaagtaaaaatataaGCAT

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60251 lncRNA downstream 32271 30631028 ~ 30733360 (-) False G40711
TU60254 lncRNA downstream 34393 30679158 ~ 30731238 (-) True G40711
TU60247 lncRNA downstream 40405 30720192 ~ 30725226 (-) True G40708
XR_006251069.1 lncRNA downstream 54953 30708773 ~ 30710678 (-) True LOC122345983
TU60290 lncRNA downstream 55740 30708870 ~ 30709891 (-) False LOC122345983
TU60299 lncRNA upstream 807 30770714 ~ 30772024 (-) True G40739
TU60336 lncRNA upstream 47825 30817732 ~ 30825296 (-) False G40752
TU60329 lncRNA upstream 51218 30821125 ~ 30828314 (-) False G40751
TU60330 lncRNA upstream 51218 30821125 ~ 30828314 (-) False G40751
TU60332 lncRNA upstream 51218 30821125 ~ 30828314 (-) False G40751
XM_043240578.1 mRNA downstream 10691 30734104 ~ 30754940 (-) False golga2
XM_043240576.1 mRNA downstream 10691 30734104 ~ 30754940 (-) False golga2
XM_043240577.1 mRNA downstream 10691 30734104 ~ 30754940 (-) False golga2
XM_043240575.1 mRNA downstream 10691 30734104 ~ 30754940 (-) False golga2
XM_043240570.1 mRNA downstream 10691 30734104 ~ 30754940 (-) False golga2
XM_043238521.1 mRNA upstream 61282 30831189 ~ 30835734 (-) True rabepk
XM_043238238.1 mRNA upstream 150910 30920817 ~ 30941882 (-) True LOC122344688
XM_043238243.1 mRNA upstream 172607 30942514 ~ 30951488 (-) True cux2a
XM_043238956.1 mRNA upstream 208686 30978593 ~ 31052589 (-) True mcc
XM_043238245.1 mRNA upstream 284017 31053924 ~ 31064355 (-) True rcl1
TU60256 other downstream 68943 30631028 ~ 30696688 (-) False G40711
TU60253 other downstream 68943 30650941 ~ 30696688 (-) False G40711
TU60233 other downstream 152490 30604844 ~ 30613141 (-) False fubp3
TU60232 other downstream 162138 30600901 ~ 30603493 (-) False fubp3
TU59791 other downstream 672118 30091949 ~ 30093513 (-) False rnf170
TU60266 other upstream 19726 30789633 ~ 30792719 (-) True G40713
TU60335 other upstream 49608 30819515 ~ 30826358 (-) True G40752
TU60340 other upstream 49608 30819515 ~ 30826358 (-) False G40752
XR_006251005.1 other upstream 932546 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 951363 31721270 ~ 31722906 (-) True G41035

Expression Profile