RNA id: XM_043238541.1


Basic Information

Item Value
RNA id XM_043238541.1
length 2632
RNA type mRNA
GC content 0.45
exon number 15
gene id im:7154036
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26626193 ~ 26637865 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGTATAATAGTAAACCTATGAGTGCagcaattaaatgtattaaagtgtACTGTGGAAGCATAGatgttttctgttaaaataaatagatgcatGCTTACATGcgtaaagaaagaaaaacaaattgaaCAAGCAATGTCGTTTATATggctttgtttcattttaaaagtgcatctcttatcacaggaagaggaagagaaaccTATTTATGGGTAGCTGAACCCTTAAGAAATCAGTCTGAAAAAGAGAAGAGCCATTCACTCGCATAGACGAGGTGAAACCTCggcagagaaagacagaaaaagagagggaggaagtGACAGCACATGTCTCACAAGTTTTTGAGAGAGGCAGATAGAAAGTGCTAGAGACCAAGGGCGTAGTCTGTACATCGCTTAACATTTTTGGAACCACAACCATACGAGACTAGAATGGCAGTGTGGGATCTGTCCGTCTCCATAGAGGAACTGGGACCAGAGGCCCCACCTCTTAAAATCAGTGTCACCTCGGACCTACATATCGGTGGAGTCATCCTCAAAGTTGTGGAAAAGTCAGaaataaaacaggATTGGTCCGATCATGCTCTGTGGTGGGAACAGAAGCAGCAATGGCTACTAAAACCGTCCTGGACATTGGATAAATGTGGAATTCATGCGGATGCCCGACTCTGCCTCACACCCCAGCACAAGCCCCTGCGGTTGGTAATGCCCAGCGGCATCGTCCTCCGAGTGAGAGCCTGCTTCTCCAGCCCCATGTTCCGCACCATCATGGGCATATGCAAACTCCTGAACATTCGGCGCCCAGAGGAACTATCCCTACTATGGCCAgtagaagagaagaagaaaaagaaagataaagatGCTGGTGAAGAGGTGTATGATATCACATGCGCACCACTTCCATCAAGCACAATTCCGAAGCTTGCCAATGGCATGCCTGCTTTCTTTGCTGAAACTCCTGAAACTGAGGCTGTGTACAAAATGCTAGCGGTCAGTCAGCCTGCTCCAGCACCAGAGACCATTGCTAAGCTGTATCGGACAACTAACATAACGGAGAAAGCACATATTAACAGCAGGTGGTTGGATTCGTCCCGTTCTCTTCTACAACAGGGAATCAAAGAAAATGATAAGCTCTTACTGCGCTTCAAATACTATACTTTTCATGATATCACACCACAGGCTGATGTGGTGCGCCTGACGCAGCTGTATGAACAGTCAAGGTGGGCCATTCTGCTGGAGGAAATCGAATGCACTGAGGAGGAGATGATGGTCTTCGCTGCCTTACAGTACCACATTGGGAAAGTATCTCTGACGGAGCAGTTTGTGGCATCTTGTCCAGCTATGGAAGATCTGGATTCGGCTCTACAGTGTCTGGAGGTGAAAATGGAAGGAGAGAGCAGTGCAGACGACATGCTGGAAACAATGACGGCACCAGAACTACATGACTACTTGAAAATATTCAGACCGAAGAGGCTTACACTGAAAGGATATAAACAATACTGGTTTACATTTAAGGACACAATCATCTCTTACTATAAGAGTAAAGAGGAGAGCTCTAAAGAGCCGATTCAACAAATGAACCTTAAAGGTTGCGAGGTGTCCCCTGATGTGAGTGTTGCTGGGCAGAAGTTTTGTATCAGGTTGCTGATACCCGGGCCAGAGGGCATGAATGAGGTGTACTTGCGCTGTGAGCATGAGCAGCAGTACAGCCGATGGATGGCAGCATGTCGATTGGCTTCGAAGGGCAAGACTTTAGCTGACAGCTCGTTCTCTAATGAGGTGCAGAGTATCCAGTCGTTCCTGGCCATGCAGAAAACCACACCTAGTAATAACACAGCTCAGACGGATGAAAGCATCAATACACACAGCCTGGTCTCTCCACGCTACCAGAAGAAGTACAAACCAAAGCAGCTGTCGCCGAGGATCCTGGAGGCCTATCAGAACGTTGCCCAGCTCTCACTAACCGATGCCATTCAGAAGTTCCTTCAGATCTGGCAGGCTCTGCCTGACTTTGGTGTCTCTTATATTGTAGTCAGGTTTAAGGGTTGCCGTAAGGATGAGGTGCTTGGCATTGCCAATAATCGTTTAATCCGCATTGACCTGAGCATCGGAGATGTTGTGAAAACCTGGAGATACAACACCATGAGGCAGTGGAATGTCAACTGGGACATCAAACAGGTGGCCATTGAGTTTGATGGCAACGTGAACATCGCCTTCAGCTGTGTGACAGCGGATTGTAAGATTGTCCACGAGTACATCGGAGGCTACATCTTCATGTCCACTAGAGGTCGGGAGCAGAGCGACACGCTGAATGAAGAGCTCTTTCACAAACTGACAGGTGGCCATGAAGCTCTTTGAGGAGAACAAAAGGTCTGTGTACCTATGGACTGAAGATAACAACgtctgacaaaaaaatgaataaataatataaatgcaaatacagaTATGGCCATTCTCtctcactcaaaaaaaaaaaaacactattgtgTCTTAACACGCTTGTGAGACCTGAGGTGTTTCATTTCGTGACCTTTGTTTAAATTGGCTTTGAGCATTCTTATTGTAggttatttttggttttactgtAAGCACCATATCTTGTAGTTATTAAATCAAACTGTTACACCTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 252371 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 472490 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 507110 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 842602 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 897723 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 238725 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 238725 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 444136 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 461950 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 478102 27115967 ~ 27146962 (-) True LOC122344810
XM_043238546.1 mRNA downstream 1177 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA downstream 1185 26615142 ~ 26625008 (-) True kat5b
XM_043238547.1 mRNA downstream 1188 26615142 ~ 26625005 (-) False kat5b
XM_043240170.1 mRNA downstream 15798 26590925 ~ 26610395 (-) True LOC122345741
XM_043238939.1 mRNA downstream 59770 26553706 ~ 26566423 (-) True LOC122345107
XM_043238542.1 mRNA upstream 1289 26639154 ~ 26647535 (-) True stip1
XM_043238198.1 mRNA upstream 35232 26673097 ~ 26719746 (-) False flrt1a
XM_043238196.1 mRNA upstream 35232 26673097 ~ 26719746 (-) True flrt1a
XM_043239284.1 mRNA upstream 132066 26769931 ~ 26789018 (-) False rps6ka4
XM_043239283.1 mRNA upstream 132066 26769931 ~ 26789018 (-) False rps6ka4
unassigned_transcript_1081 other downstream 514791 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 516623 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 524784 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 534197 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 536405 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 745056 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1251258 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1617963 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2822720 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2979134 29616999 ~ 29655061 (-) False eng

Expression Profile