RNA id: XM_043238568.1


Basic Information

Item Value
RNA id XM_043238568.1
length 2315
RNA type mRNA
GC content 0.45
exon number 20
gene id pde9ab
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23078556 ~ 23084925 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCTCTAACAGTTCCTTGGCAACGCTGGAGAGCAGGGGAGTGAGTGATAGCCTACTTAAAGGGCAGAGCTGTGACTCCTGCCGAAGCCGACCGCATCCATCAGCATCTCGGAGCGAGCAGCTGCACCAGATTTAATGGCACATGCTGAGTCTTATTTGCTGGTCCTGAGGAGGTAGCTGTAGATCGGGTTTTCTGTTGCTAAAGCGTCATCGGAGGTCACCATGGGGTCAAGTTCATCATCTTATGCCCCTAAAACTATTTATCTGGATGTGGATGGAAAAGTGCAAAGGGTGATTTTCAGTCGACACTGTAGCCCGTGTGATATTAAGGAACTTCTTTGTTCATCATCCAACATTGCCAGAAACACGGCTATACTTCTGATTGACTCCGAAGGAGCAATGATATCTATTGACCCCACCATGCCTGCAAACACCCCAAACAACTTATACAAAGTTATGCCTCATTCTACAAACCAAGGAGGAGAGAAGGAAGACATGTTCCAGAACGTCCTGTCGCAAGTGGCGGAGCAGTTCAGCAGGGCTTTCAGGATCAATGAGCTGAAGACTGAAGTGACCAACAGACTGGCCATGCTGGAGAAGAGAGTGGAGCTGGAAGGACTTAAAGTGGTGGAAATTGAAAAGTGCAAAAACGATCTGAAGAAATTAAGGGATGAAATGACCTCTAGAGGAGGAGTGAGAGTGAACTGCAATTGCAAATACAATTTTACTGATGACGGGAAGAAACTGTCTCCAAGGCGAGATGTTCCAAGCTACCCAAAGtACACACTTTCTCAGGAAACCATAGAGGCTCTGAAAAAGCCTACCTTTGATGTATGGCATTGGGAACATAATGAGATGCTTAGCTGTCTGGAGTATATGTATCATGACCTTGGCCTGGTTAAGGAGTTCAACATTAACCCCATAACTCTCAAAAGATGGCTGCTTGCGATTCAAGAAAACTACCGCGACAACCCTTTCCACAACTTCCGCCACTGCTTTTGCGTGAGCCAGATGATGTATGGAATGATCCATCTGTGTAACCTTCAGGAGAGGCTGACTATGACAGACATGTGTATTTTGATGACTGCAGCCGTCTGTCATGACTTGGACCACCCGGGATACAACAACACGTATCAGATTAATGCTCGCACTGAGCTGGCCGTGCGGTATAATGACATCTCTCCACTGGAGAACCATCACTGCGCTGTGGCCTTCCAGATCCTCTCTATGCCCGAGTGCAACATATTCGCCAACGTGGAGCCTGACTCCTTCAAACAGATACGACAGGCGATCATTACTCTTATCCTGGCAACGGATATGGCCAGGCATGGAGAGATACTGGACTCCTTCAAACAGAAAGTGGACAACTTTGACTTTACCAATGAGGAGCATGTTAAATGCCTGAAGATGGTGTTGATCAAGTGTTGTGACATCTCCAACGAGGTCAGACCTACGGAGGTGGCGGAGCCGTGGGTGGACTGTCTCCTGGAGGAGTACTTCATGCAGAGTGACCGGGAAAAGTCAGAAGGTCTCCCTGTGGCTCCATTTATGGACCGTGATAAAGTCACCAAACCAACGGCACAAATCGGCTTCATTAAATTCGTCCTCATCCCAATGTTTGAGACCGTCATGAAGCTCTTTCCACAGATCGAGGAGATCATGGTTCAGCCTTTGAGGGACTCCCGTGATCACTATGAAGAGCTCAAGCAGATAGATGACGCCATGTCCGAGGcgcagaagaagaaaacagagaGTATGTCTTTAGGTGGAAAGAAGAAATAGGCGACTTGCTTCTTTTATGGGATCTCAGGCTAATCCAGCTCCCAGTTTCCTGAAAACTGTGGTTTTGAACCGTTTGGGCTGTCCAAGCACCCTATTTCTGAAGGAGAGCGTTGGACCCCCTTCTGCGTATTGAGACATCAGGAATGTCCAGAAAAGGCGGCCATCAGTAGGAAAGAGGGGGTCAAGATGATTGATTCTGTTGATTTTGCTGGTCTAATTATTTTTCACAGATATGTTtgcactataaaaataaagtgcttggccctgaaatattgttttattgtcacAGGCTAGACTAAAATAAACACCTTTCAGAAATGAGCAGTCAAGATTTATAACTTGGAAATACTTAATCAGATAAAGGCATCACATGACTTGGGTATGTTTTCAGCTCTGGGACTGAGTGAGTTTTGCAGGAACTGATTTCAACAAAGCAGctattcataaaatgtatttagtaaaaaaaaaaaaagcgctgtCCCAAACGAAAAccttgaaaatgaataaaaagaaagcaaatcaataaaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57350 lncRNA downstream 41086 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 202119 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 285503 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 285503 22791710 ~ 22793053 (-) False G38634
TU57041 lncRNA downstream 1037337 22038380 ~ 22041219 (-) False LOC122344815
TU57383 lncRNA upstream 42294 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 260664 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 272649 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 517311 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 581916 23666841 ~ 23669869 (-) True G38892
XM_043238412.1 mRNA downstream 2162 23070110 ~ 23076394 (-) True oafb
XM_043240855.1 mRNA downstream 11984 23057206 ~ 23066572 (-) False pou2f3
XM_043240856.1 mRNA downstream 14081 23057205 ~ 23064475 (-) True pou2f3
XM_043240859.1 mRNA downstream 22131 23054946 ~ 23056425 (-) True zgc:194948
XM_043240857.1 mRNA downstream 24287 23050936 ~ 23054269 (-) False foxr1
XM_043239956.1 mRNA upstream 1370 23086295 ~ 23097259 (-) True slc37a2
XM_043238177.1 mRNA upstream 13915 23098840 ~ 23104975 (-) True ccdc15
XM_043238178.1 mRNA upstream 15204 23100129 ~ 23104975 (-) False ccdc15
XM_043238281.1 mRNA upstream 21004 23105929 ~ 23119144 (-) True hepacamb
XM_043240775.1 mRNA upstream 42287 23127212 ~ 23132008 (-) True nrgna
XR_006251119.1 other downstream 1038522 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1118672 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1194534 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1194534 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1252451 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 517319 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 666955 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 802378 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1112780 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1503103 24588028 ~ 24594116 (-) False anapc2

Expression Profile