RNA id: XM_043238571.1


Basic Information

Item Value
RNA id XM_043238571.1
length 1327
RNA type mRNA
GC content 0.46
exon number 9
gene id capga
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10981587 ~ 10986048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATCATTTGGTTAACAAGCTTTTGTCTTGTAACCATCAGCTCCACATAGTCAATGCCTTGATAACTGCGTCTGGTTTTTGTAAGTTACTGAGGGGGAAATGGCAGGAAGTTATGAAAAAAGTCAGTCAACTGCATATGCAGTAGAGCTGATTGTTCAGGCAGCAGTTACATTTAGAGCTGGACTTACATCAACAAAGACCATTGCATTGAGGATGCTTAATCTGCGGGCGGCACAGAGTCAGTTTACCGATGAAGTGCAAAAGCCAGGGTTGTACGTCTGGAGGGTTGAGAAGATGAGGGCCGTGCTCCTTGAACCATCACAAAGAGGAATCTTCTACAATGGGGATTCTTATATTGTGCTCAGCAACCGAGGAAAGGATGGAAGTGACCTGCACATGTGGATGGGTGAGAAGTCATCCCCGGATGAGCAGGGTGCTTGTGCCATGCTTGCCACTCAGCTGGACAGCTTCTTGGGTGGAGAGCCAGTGCAACACCGACAGGTGCAAGGATACGAGTCGTCTGAGTTCATGGGACTCTTCCCTGAAGGAGTCAGTTACAAGgAGGGTGGAGTGGATTCTGGGTTTAAGAGTGCCAGGTCCAGGGCTGACCCTGTTACACATCTCTACCAAGtcaaaggaaagaaaaacatccGTGCAAGAGAGGTGGAGCTTAGCTGGGGGAGCTTCAACAAGGGCGACTGTTTTATACTGGACCTTGGAGAGAAAAATAATATAGTTGCATGGAGCGGTTCCAAAGCCAATATGTTTGAGCGTCAGAAGGTGCGAGAGATAGCAATGCTGATCAGAGACACTGAAAGGAACGGGAAAGCTCACATCATTGATGTGACAGAAGGAGAGGAACCACTGGAGATGGTTCAGGCACTTGGTCCAATCCCAGCTCTTAAGGACAGCTCAACAGAGGAAGACGCTGAAGCAGACAACACCAATTCTGCTTGTCTTTACAAGGTGACTAATGCAACAGGCCAAAAGATCTCGACAAAACTGTGTGACAAAGGCCCTTTCAGTCAAGAGCTGCTGGAGAAACATGACTGCTTCGTCCTGGACAATGGATCTAATGGGAAGATTTACATTTGGAAAGGTAATGGAGCCAATGCAGACAAGAAAGCAGCTGCACTGAAGGTTGCAGAAGAGTTAATTACAGAAAGGAAATATCCCAGGATGAGAACGCAGGTGGAAATTCTCCCTCAGGGGCGTGAATCTGTCCTCTTCAAACAGTTCTTCAAGAGCTGGAATTAAACACATACTAACATATGGGATGTATGTAGAAAATAATACACACAGCATCACACAGCTTACCAATTTACCTT

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51838 lncRNA upstream 143220 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 165286 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 433962 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 647779 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 651265 10329889 ~ 10330322 (+) True G35042
TU51912 lncRNA downstream 151004 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 151004 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 201206 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 218452 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 220268 11206316 ~ 11208454 (+) True G35274
XM_043239664.1 mRNA upstream 9273 10969502 ~ 10972314 (+) True mrps31
XM_043239667.1 mRNA upstream 17983 10960340 ~ 10963604 (+) True tm4sf21a
XM_043238332.1 mRNA upstream 33172 10946115 ~ 10948415 (+) True sox19a
XM_043239762.1 mRNA upstream 39944 10934545 ~ 10941643 (+) True eif4a1b
XM_043240924.1 mRNA upstream 47834 10926823 ~ 10933753 (+) True senp3a
XM_043239528.1 mRNA downstream 857 10986905 ~ 10992885 (+) True si:ch211-114c12.5
XM_043238298.1 mRNA downstream 34273 11020321 ~ 11028005 (+) False pdha1a
XM_043238297.1 mRNA downstream 34289 11020337 ~ 11028005 (+) True pdha1a
XM_043238296.1 mRNA downstream 43039 11029087 ~ 11041122 (+) True rps6ka3a
XM_043238295.1 mRNA downstream 43039 11029087 ~ 11041122 (+) False rps6ka3a
XR_006251113.1 other upstream 48424 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 250535 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 863461 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1182229 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 2110069 8867513 ~ 8871518 (+) False man1b1b
XR_006251083.1 other downstream 60432 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 938180 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1263090 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1263090 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1528028 12514076 ~ 12516108 (+) False si:ch211-225b11.4

Expression Profile