RNA id: XM_043238578.1


Basic Information

Item Value
RNA id XM_043238578.1
length 3768
RNA type mRNA
GC content 0.49
exon number 21
gene id wdr44
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13720781 ~ 13732483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGATGTTGCGAGACTTCGGTGGACGCGAGAAGACCTGTCGCCgtttctcttcctcctctcggTTTGTTTTCGATCATAAATCCCGGTAGGGGATCTTCCCGATATGCCAGGATCACTGACAGTCCACACGGAAAGCTTCGGGCGGACCTTCGCACTGCATTACCACTTGATTAGATCGACGTAACCGGCTgattgtgctttaaaaaaaaaaataaaacgcaacCCGCTGTCTGAGATCTTGTAATCTAGGCCGTGTGTCTGCTTGCGTTATCGTACGTTCAGATCTGGGAGCTTTTCCTCGTTTGCTGAAACGGTAGCAGTGGCGGCGGCCTCTGTATGCAGCCCGGGCTCAATGGCGTCGGACACCAGCGACACGGAGGAGTTTTACGATGCGGCGGAGGATGTCAACTTCACTCCCTCACCTCATGCGTCACCGGCAAAGTTTGAACTTCCTCAGCCTGGGGGTCCTGCAGAGAATGTGGTACAAGAAGTCGCCGCTGGATTGGTTCAGCCTGAATCCCTCCATGACGATTCTCTTCAGATCATTGACAGTATTATAGAAGAGAGCCAAAAAAGTGGAGTAGAGGATGAGTTGTTAAAAGGAGAGGAGGCCTGTGCAGCCACATCTGAATCAGAGAGCGCAGGAGCAGGAGGTTGCAGTGTTAAAGAAAACCTGGTTCATGAGGTCGCCTTGGTGCCTCCAGAGGATCCTGATGTAACACCACATGAGCTGGGTTGCATTGAGCAGGTGCCTGATGTAAGGCCGAAGGAAGTGAGGCCACAGGACGTTCAGAACAGAGCACCGGATGTGGCTGGTCCTGCCCAAGCAGGTCAGGACCAGGCTATGCCACCCCCTCCTGACATTACAAGTGCTTTAGGTCAGCCATCGCAACCCGCCTCCATGCCTTGCGCAGAAACGGCTGATCTTCTTGAGCAGGTCCCTATGAGTGATTCAGATGGCCCTGGCCCTTCCAAACCTCCCAGACAGTTTACAGTGGAGCCAGATATTGTAGCTAGCACCAAGAAGCAACCGCCCTCAAGGCCACCTCCGCCCGCTGGGGCTCCACCTCCAAGGCCGCCTCCTCCCTCACGGCCAAGCTTTTCTGCTAAAAAATCCCAGGAAGTCATGCGACCAGCAGGGCTAGAAGTCTCTGTAGAGCCAGCGGATGAGCTGTGCGGATTGGTCAGCCCAAATGCCACAGTACGATGTATTGCTAAAGAGCTCCAGCACTCACTGGACCTTGCTAGCGCCACTAGTGGTGATAAAGTGGTCACTGCACAGGAAAATGATGAGCAAACGTCAAGTCCTACTGGAAGCGAGACTGCTGGTCCTCAACGACCAAGGTCTAACTCAGGAAGAGAGCTTACAGATGAAGAGATTCTTGCAAGCGTGATGATCAAGAATCTGGACACTGGCGAGGAGATCCCTTTGATCCAGGCAGAAGAGAAACTACCAACTGGAATCAACCCTCTCACACTGCACATCATGAGGAGAACCAAGGAGTATATCTCAAATGATGCGGCACAGTCGGATGATGATGAAAAGTCCCAGCCTGCACTTACAGACACAGATGGAGGGAAACTGAAGCAGAGAACTACACAGCTGAAAAAGTTTCTGGGCAAGTCTGTGAAGAGGGCAAAGCACTTGGCAGAAGAATATGGAGAGCGAGCCGTAAATAAAGTCAAAAGCGTTCGGGATGAAGTGTTCCACACAGACCAGGATGACCCGTCCTCCAGTGATGATGAGGGGATGCCGTATACCCGACCGGTCAAGTTTAAAGCTGCTCACAGCTTCAAAGGCCCCTTTGACTTTGATCAAATCAAAGTAGTGCAGGACCTGAGTGGAGAACACATGGGTGCTGTCTGGACAATGAAATTCTCTCATTGTGGGAGACTGTTGGCCACAGCTGGGCAGGATAACGTGGTTCGAATCTGGGTCCTAAAAAATGCCTATGACTATTTCAACAACatgagaataaaatataacacagaagGACGCGTGTCACCATCTCCCTCTCAGGAGAGTCTTTGTTCCTCAAAATCAGACACTGAAGGAGGGTTTGGTGCTGCAGTGGAAGATACTGACACCGAGGACAGAAATGTGCCTTTCCGGCAAGTTCCGTTCTGCAAGTACAAGGGGCACACTGCTGACCTGCTGGATCTGTCCTGGTCCAAGAACTACTTCCTGCTGTCATCATCGATGGATAAGACGGTTCGTTTGTGGCACATCTCCAGGAGGGAGTGTCTCTGCTGCTTTCAGCACATAGACTTTGTTACAGCCATCGCATTTCATCCCAGGgATGACAGGTATTTTTTGAGCGGTTCTTTGGATGGAAAGTTGCGGTTGTGGAATATTCCAGATAAGAAAGTGGCACTGTGGAATGAGGTGGACGGACAGACACGTCTGATAACAGCAGCTAACTTCTGCCAGAATGGAAAATATGCAGTTATCGGCACCTACGATGGACGCTGCATTTTCTATGACACAGAGCGCCTTAAATATCACACCCAAATCCACGTCCGCTCTACGAGAGGTAGGAATCGAGTGGGCCTCAAAATCACCGGTATTGAGCCCCTGCCAGGAGAGAACAAGATCTTGGTGACGTCAAACGACTCTCGCATTCGTCTGTATGACCTCAGAGATCTGTCTCTGTCTATGAAGTACAAAGGCTACGTGAACAGCAGCAGTCAGATCAAAGCCAGCTTCAGTCATGACTACTCTTTCATTGTGAGCGGCTCCGAGGACAAATATGTGTACATCTGGAGCACATACCACGACCTGAGCAAATTCACCTCTGTGCGGAGAGACCGCAATGACTTCTGGGAAGGGATCAAAGCCCACAATGCCGTAGTTACTTCAGCCATTTTTGCTCCGCATCCGGATCTCATCGTGCCTCAGGAGGCAGGGACAGAGAAGCCAGACTCGGACTGTAAGAGTGACAGCACAGACGACTCTGAGACCATCCCATCAGGGGCCCTGAAAACAGACCACTCTGAAGTTTTGCTCTCTGCGGATTTCACTGGAGCCATTAAAGTTTTTGTCAATGTTAAGAAATACTGAGTGCTTGTGCTGAATATGACACCCGGCGAGTAtacagaattaatttaaaagctCCTCTCAGCTTTCGGAGACAGCTAAAGCAAAATCAGTGCCACTTTACACCTAACTGAGCCCCCATTCATTGACCAATCAGCTGCTGGAGAGTGCTCTGGGAGGCAGGGATTATAAGCCCCGCCTTATATGCAGAGAACAGGGACCCAGGACGTTGGAAGGCGGGGACGGTTGAGAAGCAGGGACAAACATCATTACAGCTAAACGCCTCTTTCTTTAccttcctttctttttaatttgatatCTTTTGAAGAGGTATCGTTGTATTGTTACTGTATGTACAAAAAGGGCTTTAATTTGCATAAAGCAATGATGCCATTTTAATGGATGAGTGAAACTGCAAGCCTGTATGGAGACAGAATGGATATGGGAGACGCAGGTAGTGAGCCCTTcgcccttcacacacacacacacacacacacacacacacacacacacagacacacaaaaactgACTTGAATTCCCTCCCACCACACACTTTGACCCCAAAGTCAGTGTTTCTGGTTAAAGATCTCACATTTCCAACATGAGCACTAACTGAACTCATTTCAATTTAAGAGTCTttgtcagtgttattttatgttgtaaaaataattgaacctgatttttttatgtgtatgattccagaaataaaaaaaaaagatataaagat

Function

GO: NA

KEGG:

id description
K20241 WDR44, RAB11BP; WD repeat-containing protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53473 lncRNA downstream 7361 13712680 ~ 13713420 (-) True G36297
TU53382 lncRNA downstream 8822 13708100 ~ 13711959 (-) True G36224
TU53457 lncRNA downstream 77456 13642526 ~ 13643325 (-) False LOC122345175
XR_006250978.1 lncRNA downstream 77467 13619026 ~ 13643314 (-) True LOC122345175
TU53448 lncRNA downstream 83458 13633670 ~ 13637323 (-) True G36279
TU53531 lncRNA upstream 85765 13818248 ~ 13819334 (-) True G36337
TU53602 lncRNA upstream 242869 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA upstream 242869 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA upstream 242869 13975352 ~ 13977070 (-) False G36385
TU53878 lncRNA upstream 543613 14276096 ~ 14310067 (-) True G36541
XM_043239033.1 mRNA downstream 21565 13654294 ~ 13699216 (-) True lrch2
XM_043239036.1 mRNA downstream 21566 13654294 ~ 13699215 (-) False lrch2
XM_043239035.1 mRNA downstream 21566 13654294 ~ 13699215 (-) False lrch2
XM_043239034.1 mRNA downstream 21566 13654294 ~ 13699215 (-) False lrch2
XM_043239038.1 mRNA downstream 67730 13646648 ~ 13653051 (-) True il13ra2
XM_043240423.1 mRNA upstream 112920 13845403 ~ 13848070 (-) True LOC122345901
XM_043240379.1 mRNA upstream 206158 13938641 ~ 13940216 (-) True chrm1b
XM_043239846.1 mRNA upstream 232672 13965155 ~ 13967827 (-) True LOC122345582
XM_043239548.1 mRNA upstream 255006 13987489 ~ 14000256 (-) True arhgap35b
XM_043239554.1 mRNA upstream 268076 14000559 ~ 14002075 (-) True fxyd2
TU53475 other downstream 2238 13717124 ~ 13718543 (-) True G36298
XR_006250976.1 other downstream 21555 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other downstream 21555 13659974 ~ 13699226 (-) False lrch2
TU53374 other downstream 138540 13579061 ~ 13582241 (-) True h3f3c
unassigned_transcript_955 other downstream 345081 13375629 ~ 13375700 (-) True trnap-agg_13
TU53529 other upstream 85259 13817742 ~ 13818942 (-) True G36336
unassigned_transcript_956 other upstream 106407 13838890 ~ 13838962 (-) True trnam-cau_26
unassigned_transcript_957 other upstream 112404 13844887 ~ 13844959 (-) True trnam-cau_27
TU53547 other upstream 113895 13846378 ~ 13848059 (-) False LOC122345901
XR_006251003.1 other upstream 269451 14001934 ~ 14009536 (-) False tmprss13b

Expression Profile