RNA id: XM_043238580.1


Basic Information

Item Value
RNA id XM_043238580.1
length 3046
RNA type mRNA
GC content 0.46
exon number 24
gene id zgc:163098
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13705427 ~ 13718551 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCATTTCTAGTCTATTCAAAATGGCGGATTAACAACAAACGAACGGTTTCGTTTTTGCAACGCAAGAGCTGTttgacATGGCAGACAAAAAAGGGAAATCTGTGGGGGTGAAGAGGACcctaacaaaaaaagaacaagaggaaatgaagaaaaagGAGGAAGAGAAAGCTGCTGAAGTCTTTGAGGAATTTATAGCTTCTTTTGACACTAATGACAAAAGTGGAGTGAAGACATTTGTACGAGGAGGCATTGTGAATGCAACTAAAGAGGAAGAAGCCGCAGAGGTGAAGAAGAGCAAACTCTACAGACCCGCCTCTAAATTCACTTCTCCACCTCAGAATACCTCACCTGTTCAACCTGCAGAggttaaaaaaactACTGTTAAAAAGAAAgtggaggagaagaagaagagtaaTCTAGAGCTCTTTAAAGAGGAATTAAAACAAATacaggaagaaagagaggagCGATACAAAAGGAAGAAAGGTGACTCTGGAGGAGTGTACCCTGATCTGGATTTACCTCTGACAAGACGATCAATATTTGATGATGATCCTGCAGTGCCAAACACAACAAACCTGTACATCGGCTGCATCAACCCCAAGATGACAGAGGAGATGCTCTGTAAGGAGTTTGGAAAATACGGACCTCTGGCCAGTGTGAAGATCATGTGGCCTCGCACTGAAGAAGAGAGAACAAGAGTCACCAACCGTGGTTTTGTTGCCTTCATGACGCGGAAGGATGCAGAGCGTGCTTTGGCCGCACTTGATGGTAAAACAATAATGGGTTTTGAAATGAAGCTAGGTTGGGGGAAGGCAGTACGTATTCCTCCTCAACCTCTGTACACCCCCATCGGGGTGCTGAAGACCACTGCCCCCCCTCCACCATCTGGACTGCCGTTCAATGCTCAACCCAGAGACCGCTTCAGAAATGACTTCACCAAACCGCGCAGCCGCTCACAGGAAGACTTTTACAAGACTCTGTCCGAGGCCGTAGTGACAGTGGTAATCCCCCCAGAAAGGAACCTGCTGGGCTTGATACACAGAATGATTGAGTTTGTGGTGAGAGAGGGACCCATGTTTGAGGCCATCATCATGAGCAGAGAAAAGAACAACCCTGACTTCAGgtttttatttgataataagAGTCAGGAACATGTGTACTACAGATGGAAACTCTACTCCATTCTACAGgGAGAGAACCCAAATAAATGGAGAACATCACCTTTCAGAATGTTCCGGGGTGGCTCTCTATGGAAGCCACCTCTTCTTAACCCATATCTCCATGGTGATGAGGAACCAGAAGAGACCTCCTTCCCTTCTCAAGAGGAAGAGCCAAAGAAAGGGCACCTGAAGGCAGAGCACAGAGAGAGGTTGGAGGCCTTGCTAAGAGGGCTGACTCCTCGCAGGGATGAGATCGGTGATGCGATGCTATTCTGCCTGGAGAGAGCGGAGGCTGCTGAGGAGGTCGTCTCCTGCATCACCGAATCTCTGTCTATAGCACACACACCACTGCAGAAGAAGATTGCCAGACTTTACCTAATATCTGACATCCTCTACAACTCCTGTGCCAAAGTTGCCAATGCGTCATATTTCCGCAAATTTTTTGAGACAAAGCTGCCGCAGATATTTGGAGACATCAGTGAAGCGTATCGGAACATCCAGGCCCGACTCCAGGCAGAGCAGTTTAAGCAAAGAGTCATGGGATGTTTTCGTGCGTGGGAAGACTGGGCAGTTTATCCAGATTCCTTCCTGATCCAACTGCAGAATATATTCCTAGGGCTTATTAAACCTGGAGAGGAAGTTATTGAAAGAGCAGAGCCCAAATCTCCTGATCTAGATGGGGTGCCGTTGGATGGTATTCCTCTAGAGAGAGGTGAAATTGACGGTACACCCCTTGATGACCTTGATGGATCACCTATGACCTGGGATCCATCCTCTATTGATGGTGTACCGGTTGATGATATAGACGGTGTTCCCCTAGGAAATTCTATAGACGATATTGATGGTGTGCCATTTGAAGAGGGCTCAGATAAGACTTTACCCACTGTTGCACTGTCTAAATGGGAGAAGGTGGAAGAATCAGAATCCTCAGCCAAGAATGACTCGGACACCGAGGTGAATTCAAGTGGCCTGAAGGAAAACGATGGTGACTCAGATATGAGCAGTGATGAAGCTGACAGCCCCAGCAGGTATGAGGGGGCGGAGTTTAAGAGTTCTCTGAGAAACTTTGAACTGTCTGAAAATAAAAGGACACGACTTCGAGAACTGGAGGTGAAGGTGATGAATTTCCAGGATGAACTGGAGTCGGGTAAGAGACAGAGGAAGTCTAGTATGACTCTCCAACAGCAAGTTCAACACTACAGAAACAGACTGCTACAGAAGGAGTTTGACAAGGACGATCAGGAAAAGAGAgacaaatattcacaaaaacagaaagatcGGTCCAAAAAAGATGAGCGTAGAGATAAAGGGGAGGACAGGAGTAAAACAAGGGATAAAGAAAAAAGTAGAAAGAGTGAGGACAGAGAAAGGAGTAGAGGACGGAGTCGAGAcaaagaagagaggagagagagAACAAGATCCCGATCCCCACGCAAGTCAAAGCGCTCTCGCTCACCATCACCACAGCACAAATCCTGGAGGTCATCGTCCCGATCGCCACATCGCTCGCACAAAAAGACCAAGAAGAGCAAACACTGAACTCTGTGAGCTCTGCAGTCATCTCGTAACACATCCTAATGGAGCCTATGGATGGACTGCTTTTGTCATGCACATCAACATGTTTTTATTCCACAGTTCTTTAATTCTGACTGGCTGATTACCAGAACGGTCCTCAGTGTGGCTGCTGCAATCACAAACCTGGGCTTGGCTGAGTTTTTCTAAGATAAAGTGTGAACTTGTACAgatcttctttttgttttgtaaaccgttttatttgtgttttcctCTTGTTTTAAATCCggtgtttaaaaaacaaatgctgcaAGATTGACCCCTCCACCTCCAgactttacaataaaaacaaattgtggAAGGAAAAA

Function

GO: NA

KEGG:

id description
K12842 SR140; U2-associated protein SR140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53304 lncRNA upstream 56889 13647926 ~ 13648538 (+) True G36168
TU53263 lncRNA upstream 124629 13566977 ~ 13580798 (+) True G36141
TU53255 lncRNA upstream 183819 13519973 ~ 13521608 (+) True G36140
TU53205 lncRNA upstream 381044 13324033 ~ 13324383 (+) True G36109
TU53198 lncRNA upstream 393042 13312061 ~ 13312385 (+) False LOC122345423
TU53333 lncRNA downstream 2234 13720785 ~ 13721566 (+) True G36191
TU53340 lncRNA downstream 13418 13731969 ~ 13732456 (+) True G36198
TU53521 lncRNA downstream 255981 13974532 ~ 13974759 (+) True G36332
TU53654 lncRNA downstream 280549 13999100 ~ 14000337 (+) True G36405
TU53655 lncRNA downstream 281975 14000526 ~ 14003531 (+) True G36406
XM_043238581.1 mRNA upstream 903 13700264 ~ 13704524 (+) True si:dkey-17o15.2
XM_043239045.1 mRNA upstream 66574 13633826 ~ 13638853 (+) True tagln2
XM_043239044.1 mRNA upstream 79005 13623847 ~ 13626422 (+) True LOC122345172
XM_043239046.1 mRNA upstream 81898 13620810 ~ 13623529 (+) True tppp2
XM_043239042.1 mRNA upstream 92758 13608474 ~ 13612669 (+) True nfkbib
XM_043239789.1 mRNA downstream 14971 13733522 ~ 13776553 (+) False klhl13
XM_043239790.1 mRNA downstream 14971 13733522 ~ 13776553 (+) False klhl13
XM_043239792.1 mRNA downstream 14972 13733523 ~ 13776553 (+) False klhl13
XM_043239793.1 mRNA downstream 14972 13733523 ~ 13776553 (+) False klhl13
XM_043239788.1 mRNA downstream 30355 13748906 ~ 13776553 (+) True klhl13
XR_006251084.1 other upstream 898211 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1000186 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1189319 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1449755 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 265546 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 571869 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 581492 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 581492 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 928938 14647489 ~ 14651911 (+) False fgf5

Expression Profile