RNA id: XM_043238602.1


Basic Information

Item Value
RNA id XM_043238602.1
length 6100
RNA type mRNA
GC content 0.46
exon number 22
gene id arvcfb
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9863630 ~ 10028037 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCTTGGAAGAATCCAATAACACCGAGAGGGTTATTGTCGTCTACGTTGGAAAGCGTAGCAGCATTTTACAAGTCCCCTTTTTACAATTTAAGCCGACTCATTTCCTCTGAATAATCACGCGAATGATTCGGAAAAAGTAAGCCGTGATTTTCTTTCGCGGAGATGCGTGAAGCTAATCGTGGAATCATCCGCTGATACTGTTGACAAGTTGAACGagtgtgctgctgctgctgctgctgccgtCCCTACAACTCACTCACAGAGAGCAGACAGCTGCTGTATCGAGCAGAGGTTCTTGGGAGGAGAGCTCCAGTTCCAGTCAGCCCTCTCTAACAGCCTTAACCCTCACGTCCACACGCATCCCGACTGATTGCTCAGCTGACATCAAAGTCGGCTCTCGCTCACTCGCTCCTTCTTTGCCTCCCGCTGGGCACATCTCCTCCGGTCTGTCCTTATAGGGGGATGTCTGTCCTCTAACTGCCTCTCTCTCCACTAACTGCTAGCATATAATTTTGGGTGCTGCCATGGAAGAATATGACGTGCCGTCAGCCGCCAGTATCCTGGCATCAGTCAAAGAGCAGGAGGCGCGCTTCGAGCGCCTGACCAGGGCCCTTGAAGAGGAACGCCGCAATGTCTCCTTACAGCTGGAACGCGGCAGTCTGCCCTCTGATCGACTGGTGGGCGGCACCACAGGCGGGAACAACCAACCGCTGGCCTGGCAACAGATGGTCATGCAGGAGCAGAGTCCCAGTAACCAGACATCACTGGCCATGATGCAAGAGCCCCAGGAGGTTGTGGAGGAGACTGTAACTATAGAGGAAGACCCTGGAACACCCACCTCTCATGTTTCTGTGGTTACCTCAGAGGATGGGACTACGCGCCGCACAGAGACTAAGGACAATGTGACTAATTTGAAGGTCACTAAAATGGTGAAGACAGTGACAACACGGACAGTTCGACAGGTGCCGCTGGGTCCAGATGGCCTTCCTCTTCCAGAGGGCTCATCTCCACTGGGAAGCTACACTGACTCCATTGATCGGCGCTACATGAAAAACGGCGAACGCTTCATCACACCCCAGGCCACTTCCACCCTCACACGCTCATATAACAATTACAGCGACTCCTACAATGACACTCCAGAAAGTCAGTTTCGCCATTACGCCCTTCACGATGGATACGGAGACGTAGCCGACAACTACGGAAGTCTGTCTCGTGGGGTCAATTACAGGCCCTATCGCCCCTACATGCCCACCGGTGGATACCGGCCAGAGAACAGCTACACTCTCCCCATTCGCAAGGACGACTATGGCCATGTGGCCCAGCCTCAAGTCCCAATGGGAAGTAGCACTGTGGATCTCAATCGTTCTCAGCCTGAGCGCTTTCAACCCGAACCCTACGGACTGGAAGATGACCGCCGCAGTCTAGGCCCAGATGACGAAGAGACGTATGACCTAGAGCCCGATTATTCCACAGCTAACCGCCGCACACTGCCCGGACGTACCATTCGAGAGCCATTGCGCAACGGCCCCCGTGTGAGAGGCTACGAGGACCCCATTGAGGCTGAATTAATTGATGAAAGACACCCCTACATCCATGGCATGTACCCAGCACCTCTTGCCCAGCCTGAGAGAGGTAGCTTGGCCAGTCTAGATCGCATGGGCGGCCGTCGCTCCCCCTCGATTGACAGCATCCGCAAAGACCCTCGGTGGAGGGACCCTGACCTGCCTGAGGTCATCGCCATGCTAGGCCACCCCATCGATCCAGTCAAATCCAATGCAGCGGCCTACCTGCAGCATCTCTGCTATGAAAATGACAAGATAAAGAAGGATGTCAGGCAGCTGAAGGGGATCCCAGTGCTGGTGGGTTTGCTGGACCACCCTAAAGCTGAAGTCCATCGCAAGGCCTGCGGAGCTTTGAGAAACATCTCTTACGGCAAGGACCACGATAACAAGGTGGCCATCAAGAGCTGTGACGGGATTCCTGCTCTCATCCGTCTGCTGAGGAAAACCAATGACATGGAAGTTCGGGAGCTTATCACAGGAACACTTTGGAATTTGTCGTCCTATGAGCCACTGAAGATGGTGATAATTAACCACGGGCTTCAGACGATGACTAACGAGGTTATTATCCCTCATTCGGGCTGGGAACACGAGCCAAATGAGGACTCAAAGCCACGAGATGCAGAGTGGACCACCGTCTTCAAGAACACATCAGGATGTCTAAGGAATGTGAGCTCAGACGGTGCAGAGGCGCGCAGACGGTTGAGAGAGTGTGAGGGGCTGGTAGATGCCTTGCTGCATGCTCTGCAGTCGGCTGTGGGAAAGAAGGACATGGACAACAAATCTGTGGAGAATTGTGTTTGCATCATGAGGAACCTGTCTTACCACGTGCACAAGGAGGTTCCAGGGGCTGAGAAGTTCCAGGACCCCTCGGCTCTTCAGGGCCCTGGCTCTGCTGGCACtcagaggaagaagaaagatgACGCAGGCTGCTTCGGAGGAAAGAAGGCCAAAGAGGAATGGTTTAATCAAGGGAGGAAAAACGGAGAGCATGACAAAAACTATGACACGTTGGACCTACCCAAGCGCACAGAACCTACTAAAGGTTTTGAGTTACTGTATCAGCCGGAGGTGGTCCGACTCTACCTGTCCCTGCTTACAGAAAGCCAGAACTACAACACGCTAGAAGCAGCAGCCGGGGCTCTACAGAACCTCAGCGCTGGACAGTGGACATGGTCGAACTATATCCGGGCAACTGTGCGTAAGGAGAAAGGGCTGCCAATTCTCGTCGAGCTCTTGCGCTCGGACTCAGACAAGGTGGTGCGAGCTGTGGCCATCGCTCTGAGGAACCTGTCCATCGACCGCCGCAACAAAGACCTGATAGGGAGTTACGCCATGAGGGACTTGGTCAGCAACTTGCCCAGCGGACAGCAGCGGCCAGCCAAGAACCTGGAGGAAGACACAGTAGTGGCCATCCTCAACACCATCCATGAAATCATCACTGACAGCTCTGAGAATGCCCGCTCTCTCATTACCGCTCAGGCAATCGACAAACTAGTTGCCATCAACAGGACCAGCCAGTCAGCAAGGGAGACCAAAGCTGCTTCCCATGTACTACAGACGGTTTGGAGCTATAAGGAGCTGAGAAACACCCTCACCAAGGATGGCTGGAATAAAACACACTTCCAGCCGATAGCAACTGGCACTCCCAAAGGATCCAAGAGCTGCAAGCCTGGCTACGACGATACTACACTTCCCTTGATGGAGAAGAACCAAGGCAACAGAGGGTGTAGCGGTGGGGATATGATACCTATGGACGAACTCGGTCCAGATGGCTATTCGACGATTGACCAGAGAGACAAAGACTCCAAGTACAAGAGCAGCGACGGTTCGTCGGATCTGCAGGAGCGGGAGCCGTTAAAGAATGACACAAATAGGAAACACTATATCAGGAGCAACAGGCCAACTGTCAGTCTGGTGGATGCTTGTGATGTTAAACCTCAGCCTGTTGACTCCTGGGTCTAAATGCATGCATGGCTTAGCTAGCAACAGCGCCACATCTTACCACACAAGGATTTCACAAGTCACCACTGCCATTAACCGCAGAGCTCACCGTGATGTGGACTCATCTGAAGACTTTTGCCTAAAAGAGCGAAGAGAAAAATGCAAACTTTCATTCAACAGCCGATACTTTGAGATTCTCAacaagtgaaaagaaaaaaaaaaaaaaaaaaacttctcatGTGTACATTCCCACTGGACGTAGTGTACCCAGAACTGAGGATTTGCTGTCATGGAGAAGGAATGATGGATTGATTCGAGTGTACAGGAAGTGCTGTCATGGACGTGGACGTGTGCTGGAAAGAATTGGATCGAGGGGTAAaaggaaataagaaaaaactatttttgtgtcaaaaacaaaaaatataatttttgcctatattattttgttgtatgtTCCTGCCTGattactgtttgttttgtggatttgttttCCCCGGAAGTGCagtgaattgtgtttttttttgttttttttttgtttttgtttcgtttcgtttgtttggttttttttggtagcattttaatgaaagtttGGGTTTTTCTAAAGGAGTTGAGGACACTTgtgaaaggaagaaaaagaatgtttttttttgttgttgttgatgttcaTTACAACGGTGTGGGGGCACATACAAAGTCTGGGTGGGGGGTGGGTGGGGTCTATATTGAACTGCACGCTTTGGCAATTTCTGTGTGCTGGCTTTATAAAGCAACTTTAAAGACATATTATcactgtgtttgtttcttctaaCTGAGTACTGTTGTTGAAAAGCAGGGATTTACCCTGCACAGTGACATCTGCTCATAGCGGAGCCGAAAGAAGGAGAGCTGCTATGCTTTCGGCCGGATTTGGTCTGCTGATCCCATATTCCCTTTGACATGTCGAGCTGCAGAGGCATGCTGGGTAACACTGGCACTTACCAGCTATTGCTTTGGTTTATTTAATAAGGGgtaatgagaaaacaaaaatctatttgttAATATGTAGATTGTGGTATGAGGGATAGTAGGAGGATTCACTCGCTCCTGTTGTCATAAAAGtagattttaaaagcattttatatttttgttgttttataaatgtatattaggttacaaatattaaaaaaaagagggcAAAAAGGTCACAATCGTCTTTATAACATTGATAGATGTGAATCCATAACAGTTTGTTCAGAGCACATTCAGTATTCCGTACATAAAGCATGGCCATGtttgtataaaaatgattaataatataataaacagatCATTGCTTTAGTTAAATGTGTATCAAAGGCTGTAGAGTCAttgtctatttatattttatactttttacatCTTTTGTTAAAtggaagcatttattttcattgttccTAATTCAGTTGGAAAACATGTTCAAAATGATCAGACTTTAAAGAATTAATTTCAGAAGGGGAAGCAGGGATAGATACTTCCTTCATAAAATACTTCATAAAAGCCAAAACCTTCACGTCCAAAATGCGTCTCTTAAGTAtgacaaaaaaagcatgactaatttgtaatgtttttattcattcagtttgtatattaaattgTGAACACTCAAATGTTCCCACTGTCAGTGTAAAGCCATTCTGTGTCTCATATAATTGACATACTAAGTAGACCGACGaatctttttattcagtttccTTGTAATGTGAAATATGCAGCAAACACTCGCTTTATCATCTTATTTCTGTCACGTGACTCTATATATAACTCTCTatagcaaggttttttttccatagtGTTTTAACAGAGACTCCTAATAACAGAAAAACAGTGtaatgattaaatttttaaacaggAAATGTTGTGTACGTTCACATCGAGATCTTTAGCCTTGTGTAggttcattattaatatttgactgTCTGTTCCTGACTGCCTTTTTGCAGAAAACAACCAAAGGATTTTGGTACCGTGTAGTACAAGAGGTTCCCAGAGTGTGAATTTGCATCAGATTGTATATTTATAGGAAAAAAATGATGTTGAAACGGATTCAAGAGAAACCTACCTTTGTAGATATCACTAATTCAAAGCATCAAAACTCAGTACGTGTACAACTTGGTAGCAAATGTGTTTGTAACTATCATGTGCCTTAACCTTTTTCCATGTTAGATgaaaataagtgtgttttatatgttttattggTCCCtaactgctctctctctctctctctctctctctcttctctctctgtctctgacacacacacacacacacacacacacacactcctctctctctggctcCTCCCACTTTCACTCATTCTGTGTTCTCAATAGTCTAGACTGGTGGTGGGTTTTGCCTTGTATTACATTGTattataaacttttaaaagataGACACATTAAAAGGGTTTGATTATATAGTTGTTAATGCTTTCCTAGCACTCAAGAACAATGCCACAGTGACCGAATGTATTGTTAATTTTACTAATACCCAGAAGAGAGAATTGCTCTTGTTAAAGATAAATACAGGTTTGTAGAGTATCACTTTGGTGTGTTTTCAATAAATCATGCCTGAAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51323 lncRNA upstream 52781 9808449 ~ 9810850 (+) True G34861
TU51302 lncRNA upstream 95810 9767294 ~ 9767821 (+) True G34842
TU51301 lncRNA upstream 97282 9765970 ~ 9766349 (+) True G34841
TU51300 lncRNA upstream 98284 9765136 ~ 9765347 (+) True G34840
TU51186 lncRNA upstream 297724 9478605 ~ 9565907 (+) True G34747
TU51425 lncRNA downstream 4402 10032439 ~ 10033955 (+) True G34911
TU51449 lncRNA downstream 36180 10064217 ~ 10118126 (+) False fam219ab
TU51451 lncRNA downstream 36180 10064217 ~ 10139733 (+) False fam219ab
TU51473 lncRNA downstream 74848 10102885 ~ 10106441 (+) True G34941
TU51490 lncRNA downstream 233575 10261612 ~ 10264441 (+) True G34957
XM_043238408.1 mRNA upstream 31694 9829117 ~ 9831937 (+) True rnf181
XM_043240799.1 mRNA upstream 46762 9813196 ~ 9816869 (+) True ccdc117
XM_043240800.1 mRNA upstream 46762 9813196 ~ 9816869 (+) False ccdc117
XM_043239069.1 mRNA upstream 65504 9796381 ~ 9798127 (+) False si:ch211-102c2.4
XM_043240704.1 mRNA upstream 83743 9776636 ~ 9779888 (+) True zgc:64051
XM_043238610.1 mRNA downstream 6916 10034953 ~ 10042310 (+) True erap1b
XM_043239505.1 mRNA downstream 32377 10060414 ~ 10065563 (+) True rad17
XM_043239506.1 mRNA downstream 32392 10060429 ~ 10065563 (+) False rad17
XM_043239507.1 mRNA downstream 32413 10060450 ~ 10065563 (+) False rad17
XM_043238530.1 mRNA downstream 38027 10066064 ~ 10069834 (+) True ccdc125
TU51316 other upstream 64273 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 992113 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1559480 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1853032 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 2065663 7754074 ~ 7797968 (+) True p2rx1
TU51450 other downstream 36180 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 701081 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 898786 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1018443 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1896191 11924228 ~ 11942072 (+) False smarca1

Expression Profile