RNA id: XM_043238616.1


Basic Information

Item Value
RNA id XM_043238616.1
length 2623
RNA type mRNA
GC content 0.47
exon number 14
gene id zcchc8
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26854036 ~ 26859879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGTGAAGAGTTTAAACGTGTGCTGCTTCCTGTCTGCGGCCTCCGAGCCAATCGGCAGCCCCGCGTCGGCGCGGCGTAGGCCTTGCCCTTTGAACCGTGGGACGCGTCGTGCGTTGTGGTCATCAAACATGGCTGCGGTGGAGTTCGGGGACAGCGAGTTATTCGATCAGTTCGAGGAGAACGCGCCAGAGCGCGACCGTGTCGTTCACGAAGTCGGCGACGGAGAGGGCGAGAGCTCGGGTCGACTGCGCGAGCTTCGGCGGACGTTAGAAGCGTGTGAAGACACGATAGAGCGCCTGAACGCGGAGAATGAAGAACTGAAGAGAAAGTTAAACATATTAAGTCGTCCGACGGGTATAAGAATAGAAGATTCCAAAATGGACGGGCCTCTTTGTCAAATTAACTATGGAAACAACATTGTTTCAAAgcaGTGTCGGAAAGAAATGGAGGACTTCCTCTTCAGTCTTGTCCAGAAGACCCTACAAGAGTGTCAGAATAACCCAGAAAGCTCTGCTCTCCATGTCAAGCCGCATcATTCAAGTTTTGTTATGGAGGAAAGCTACAAAGTGAAGACTTCCAGTGACttcaaacacataaaaaatgctttcagcGTGATAGGGAGTGTTTTATACTTCACCAATTTCTGCGTTGATAAACTCGGCCAGCCGTTGCTGAATGAAAACCCCCAGCTGACCGATGGATGGGAGGTTCCAAAATACCAGCAGATCTTTGGCCAAATCATTGCCCTTGAGGGCCAAGAAGTGCAGATAAAGGAGAAAAGACCGAGACCATGCTGTTTTAACTGCTGTTCTGAGGACCATCAGCTGCGAGACTGTCCAGAGCCCAAAGATATGGCTCGTATCAATGAAAAGAGGAAAGAGTTTTCACAGAACAACAGTCAGAGCAACCAACGCTACCACGCAGAAGAGGTCGAAGAGCGATTTGCGAAGTACAAGCCAGGGAACTTGAGTCAAGAGCTCCTTGATGCGCTTGGGATTAATACGAAAACCCTTCCTCCATTCATCTATCGCATGAGAGAGCTGGGCTACCCACCTGGTTGGTTAAAAGAGGCAGAAATGGAAAACTCAGGCCTGATGCTCTATGATGGATCAAACGATGAAGATGAAAACAACCACAGCCAAAAGATATCTTACGACGTCTCAAAGCTGGTGGATTTTCCTGGCTTCAATGTGATTATACCCCCCAACGTACGAGATGATTACCGGTCTTTTGGTTCTATTCCAATGCAGCCTCAGCACTGGAAGCAACATTTTGCTGCCTTTTTAAGCAGTAACTTTCCAACgCAGGGCGCCAGCTGTAGCAAGAGGCGTCATGACGCTGAGTCCACACCCCAGAAGACAAAGAAATGGAAGTCCAATTCAGAAAACGAATCAGATATGGAGATAGAATCAGATCATGACATGTCTCAAATCAGATCTGATGGTTTCCAGTTCCACCCACCACTTCCTCCTGGCATTGCTCCACCTTTGCCACTGGGAACGCCTCCATCCACGCCTCCAATCCCTAAGGGAACTCCACCCCCAACTCCACCCACAAATTACTCTCCGTCCACTCAAGCCAGAGGGTTGACTGAAGGGGAAGAGTCAGAAGACGGTCTGACCCTGGAGGAACTGGAGGAGCAGCAAAGGCTTCTCTGGGCAGCCCTTGAGAAGGCAGATACTGCAACCAACAGTGATTCTGAAGCTGGAGCTTCTGAGACCCCCGTCCCAAGTTCCCCTAGTGTCGTCACTTCACTCAAACTCGACTCGGAGGAAGACGGAGAAAAGATGGAAGACTTGAGTCATACGTATGAAGTCAAAAGCACACCAACTTCACCCGTTGAGCCAGTAACTCACGTATGCGAGGACGAGAGGATAGATGAAACACCCGATGGACAGGAAGAACATTCAGTTATTAAAAAAGCAATCGATTTGCAAGCGGAGGTGAGCGACATTATTGTCCTGGATGAAGTTTACGAGGAAAACCCTAATCATGATGCAACAAATGGAACTTCGGACACTCCTCAGATAAGCGCACAGGAGTCAAATGCGCAAGTGGCCGACGACATGGAGGAACCCGTCGCAAATAAAGTAACTTTCGTCCCACACCGTAGCAGATTTGCTGAGGGAATAATTCCTTTTGAGGATACGCCTGAGTTTACGGAGGTTGCTGAAGCGACGGGGGTTTACCTCAAGATTCGAGATTTATTGAAAGGCTCCCCAAGAAATCAGGCCAAGAACAAGAAATAATCAAAGTCATACGTTTTATACTACCCACCTGTGGACAACAAGCAATGTTTTTTCTCTTATTACAGTCCTTTTCTATGTAGTTTTACTTTGGtgctttgtatatttttactgctattgtgtgatttttaaaaacacaaaaaggttACATTTGGTTTGTACCTGAATATTAACTGACTGTGGGTACTTGTTctgtgtgtagttttttttttaaattcttcccgttctgtttttctgtaattacaCTTGATATTGCTATCTCACGGCATGCTGACTTGTATGGCCACCATAGATCTGTGTAATTTATTGTGAATATCTTTCAGCCTAAATTTCTTAAGAATTCTCAACgaattaaaagttttaacttGAAAGTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13128 ZCCHC8; zinc finger CCHC domain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 480214 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 700333 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 734953 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 1070445 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 1125566 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 16711 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 16711 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 222122 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 239936 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 256088 27115967 ~ 27146962 (-) True LOC122344810
XM_043239158.1 mRNA downstream 2188 26821298 ~ 26851848 (-) False clip1a
XM_043239159.1 mRNA downstream 2188 26821298 ~ 26851848 (-) False clip1a
XM_043239156.1 mRNA downstream 2188 26821298 ~ 26851848 (-) False clip1a
XM_043239155.1 mRNA downstream 2189 26821298 ~ 26851847 (-) False clip1a
XM_043239157.1 mRNA downstream 2189 26821298 ~ 26851847 (-) False clip1a
XM_043238619.1 mRNA upstream 3526 26863405 ~ 26869594 (-) False rsrc2
XM_043238618.1 mRNA upstream 3526 26863405 ~ 26869594 (-) False rsrc2
XM_043238623.1 mRNA upstream 3526 26863405 ~ 26868994 (-) False rsrc2
XM_043238622.1 mRNA upstream 3526 26863405 ~ 26868994 (-) False rsrc2
XM_043238621.1 mRNA upstream 3526 26863405 ~ 26868994 (-) True rsrc2
unassigned_transcript_1081 other downstream 742634 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 744466 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 752627 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 762040 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 764248 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 523042 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1029244 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1395949 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2600706 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2757120 29616999 ~ 29655061 (-) False eng

Expression Profile