RNA id: XM_043238632.1


Basic Information

Item Value
RNA id XM_043238632.1
length 5128
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC122344958
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29910912 ~ 29919495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctctctctctctgtcagtggAGGTTGTTTGTGGTCAGGAAGTGTAAAGTGCCTCAGTGCTGCTTGAGCAAAAGTCATTGCAGAGCACATCCGGTCTGTTTGTCTTTAAAAGAGTGCAGAAGGCTTCACTAAAGGACTCAGTTGAGGCTTTGGAGCTTGTTGGTCGGCGTGGGAGGAAACCGCCTTTCTGAGCGTCAGTCTCAAAATGGATGCCCTGCTCATCACGGAGGACCAAGCCTAAACATGAGCTCTTCTTTCTAAACTCTTTACGATGAGCGTCTGAATGAGAAGACTATGGATGATATTGTAGACTATCAAGAGTCTGAGCCTTATTTGGAGGCCATGCAGTACATAGAGAAGATGAAGCAGGAGAACGAGAGCGACAGCATCCCGATGAAGGATCACGGAGTGTCTCTGTACCCCGTCACCGTTCCCTGCACTCCTCTCTCTTACGCTACTGTGCAATGGGACGCCCCAGAAACGCCCACAGAGACCCCCGGGTCATCTGAGGCTGAGCTGGACTCCATCACCGGCCTGAGGCTTGACTGGACAATGGACCTTCCATCTGCAGACCAGGACGCCACTATCAATTTCTTACCTGAAGCTGAGTCACAATCGGATGTTACGTCTGAGACTTCTCAGACATGCAATGATCAGAAGTCAGATATACAAACACAGCTGGTCTTTTCAAATGAGGGGCTCCTTGTATCGTTTGCTGATGTCAACGACTCCAGAACAGATACGACTGAAGAGCATTTTGAAGCTTCTGCTGGCATTCAGATCTTTATGGACACACAAGACTCAGAGATTCAACCGGGTCCAGAGAGCTCCCAGTTGCAGGAAGATAAGGAACCCAGCATATCAGACCttccaaaaacaacatttgctCATGAGGAAAACACAGATTCAGGCAGTGAAGATCAAACAAGAGAGTGGAGTGAGACAGATGCAAACAGAGAATCATCAGGCGCAAAAGAGGATATTCAGGATCAAATTCAAGGACCTGATGAATGTCTGGAAAAAGAAGAGTCTAATtccccagacatccagtctgGTCAGTCACAGGACACAATCATTACAGGCCCCGCAGACCTGCCGGCCTTCACGAACGATTCGGTGCAGCTTGAGGAACTTATACTGACACAAGAGCCAGAAAACGCAAGCACGTTTGTTACAGTGGCAGAGAGGAACCAGAATACTGGCACTTTACAACATGCACAACAGATTCAGGGCACAGACCTCTCCGAGGAATTCAGCGCACAAGACCAACAACATGTAGAAAGACCTGCCAGCTCCGAGCAAAAGTCTGACCCTGAAAATGAATCGCCAGGGCAAGAAGAGCAGAATGAGCGGTTCAGACATCCAGATGAGAGCGGATCCTCAGAGCAGATCCAGTGTTCATATGAGGAGAAACTCTGTGATCAGACGCTGCCATCCGAGCATCCAGACGTGTCCAGCAACACAGAGCAGCCTACAGCTCCAGAAGATGGGGACGAGCATGTGCAAGATGAGACATCAGAGCCAGTTATAGATAAGGAACCCACTGGTCCCTGCATCAACGGTAGCACTGAGCTCGTAAACAGGGCCGAGGCTCAGCGGTTGGCCGAGAAGCTCTATAGACTGGACGGTTTTCAGCGTACAGATGTGGTCAGACATCTGGACAAAGACAACGAGTTCAGTCGTGCCGTCGGGGAAGAGTACCTTAAATTCTTTGACTTTACCGATCAAAGTCTGGAGCAAGCTCTCCGGTCATTTCTGAAGGAGGTGGTTTTGATCGGTGAGACTCAGGAGCGTGAGAGGGTCCTGCAGCATTTCTCTGCTCGGTTCCAGCAGAACAATCCTGACATCTTCTCCTCCGCTGGATCGGTGCTCACGCTCACGTGTGCCGTGATGCTGCTCAACACTGACCTGCATGGACAAAATGTCGGGAAGCCCATGTCCTCGGCTGAATTTGTGTCAAATCTGGACGGCATGAATGGAGGCAAGAACTTCAGCAAAGACTATCTGAAGAGTATCTACAGCTCCATCAAGAGTGATCCGCTGCAGTGGGCCGTAGAGAAGGGTGTTCTGGCTAAATCCATGATGCCGGAGCAGGATTTGGACCAGGATGGACATTTGCGTTCAAAGAGTAACCCGTTCCAGGATCTCCCTCACGACACCAAGGCCACTGTGTTTCAGAAAGGCTTTTTAAAACGCAAAGCACATGCAGACATTGATGGCAAACGCACTCCGTGGGGAAAACGAAGCTGGAAGACGTTTTATGCCATGCTGAAAGGAATGGTGCTTTACCTGCAGAAGGATGATTACGTTAAAGACTGCCAGAGCTCAGAGGAGGTGGTCAGCGTTCATCACTCTCTGGCGGAGCAAGCTTTGAATTACACCAAACGGCCGCATGTGTTTCGCCTGCAGACGGCCGACTGGAGAGTCTTCCTCTTCGAGGCTGCTTCCACGGAGCAGATGAACTCCTGGATCGGCCGGATCAACCTGGTGTCTGCGCTGTACTCCTCGCCTCCGTTCCCTGCTGCCGTTGGCTCTCAGAGGAAGTTCTGTCGGCCGATCCTGCCCGCCACGCAGTCCAGCCTCATGCTGGAGAAACAGCTGCAGTCGCACGCAGCCATGCTGCACAGCTTCCAGCAGGACCTGAGCTCTCTCCAGCAGGAGGCGACGGAGAGCAGGAGGAGCAAAGGCCGGGAGCTGGAGGAGCACCGACAGAGAGAGGAGTACTTACAGTATGAGaagtcTCGTTACGAAGTCTATCTGAAAGTTCTGGAGGCCTGGCAGGTGCTGGAGAAGTCCGATTCCTCGGTCGCTAACAGACTGACCGCGCTGGACCGGGGATTGTGGAGTGGATCGATGGACGAGCAGCAGGACGAGGCCGACGCCGGGATAAAACGATCTCACTCCAGCCCATCTCTGGAGTTAGAAACACCTCCTCAGCCCGTCGTCAAAGTCAGACGCAACATCTCTGAAAGACGTACCTACCGAAAGATTGTGATTCCCCGCCGGAACAAAGAGCTTTGAACAATTAGTCTCTTACACACAAACTATCAGAAATGCTCAAAGCACTTGAATATTTTACGATTTTACATCCTTCAGTGTATTTTTAAggtaaaaacagcaacaactgTAGTCTTtttatatacagattttttgCACAATACTCTTATTAATTGACCCTGTCCTTACTGTCCACAAGAGGGAGATGTTGCTCAAGATGTTTAAATGAAGAACAAGACCCAAATCATTAGTTCTCACATCTCAAAAGAGTTTCTGGATGAATGTGTGGTCAGAAGAACCATAGTAAACCAAGTGAAGACTCCaacggtgtgtgtgtttctctgtagggaagtgctGTCATTCAGAACCACGCTTGCTTCAGCCACATTTTCCTCTGATAGCACTGCTGCTGAATGGCTCTTGTGTATCAAGTGTTTGTGAATATCTGATATCTTTCATTTAAACAGCAGCCTGTCATTAAGCTCAGATGCTGAGGATGTGTTTGATGGATTGTGCCTTCGGGCTCTGGTTGCTCAGGATGTGTCGCTTGATAAAGATCTGAAAAGCCAATATCAGATAATGCCGCCTGTTGACACGTAAACAGATTGTGAGGAAAAACAATCAAACTGTCAGTGAGTCAGAAAATGACTGAACGCCACTTATAGCCAGACTTCTGCTCTCACACCGCATTATGGAGCTCCAATGTAAGTACAAATGTACTCTAAATATGGCGAGACGATTGATTTTATACTTGAGAAGTCTGGATAGAATTATGCTTAGGAAGCATGGACACACATTCCTCACAGAGTGTCACGAAGTACTACAGAAATTGAGAAGGTGTGTTATTTTGAAGCATGCACAGGAGCAGTTTTCAACCGCTGCGTCTAAAGCTCTTGTGTTTGCTCCGCCGGTGGCGTGAGGTCATGACCAAACTCCGAGCTGGAGCCGTGGAGCATGACGTCTGCGCTGTTCCTGGAGTCAGCTCAAGTTCCTCTGAGTTTTTGTTCCTGCACGTCTGTCTGGCTGAAGGGTTTTGTGGCCGCTTGTCAGGCCTGGTTGAGTAATTAAAAAGGCAAGCGCAGGCTTTTCTTCATTAAGGGTCCTGAGCGGCACTCGTCGCTCTCATTCTCGCTTGGTCTGCCACAGAAATTCCTGACATCATTCCTCTGGATTCCTCTTTGTGCCGAGGCTCGCTCTCAGACGCGGCGGGTGAAGCGTTAACTCTGCTTTGATGGTGCTTGCTCTTCTCGCTCATTCTCCATCTGCTCCAGCGTTCCTCATCGCTCCCCTGTGTTCATCTCCTGTTCTCTTCCCAGATGGAGAGATGTGAGAGGCGGTAAAGGCAAAGACCATTTTACAGGCAACTGTAATTTTGTCACTTTACCTCTCTTGAGTCAGTTCTGTTGGCACAGGTATGGTTTCTATTTATCCGTCCATCTCCTCACACTTTACAGTGGGTTTGTTGTctcgttttaaaaaaatgatccaCATTGATCAGTCCTTCCCTGATTTATATGAGGTTTCATTTGCGAGTTTAATGAAAAACCTTATAACTGTGGGTATTTCTTTTGCTCACAGACTGAGTAAACGCTGATGATTCTGTCCCTCTCAAGCAGACTTGTATTTGTGTTGGTTTCTGCTAATGTGGCCTGAGGCGTCTCAGATGGTGACCTGAGTTTGGCCTCAGCACTGGGCCATGCTCACAACGGCCTGAAGACAATAATGGGCTCCGTCCTTCATACTGTGGAGTGAACCAGGATAGATCTTCCACCCTCTATACCACGACCGAAGTGAGATTGAACAAGAACCGAAGCCCCAGTGCCATCCCACTGCTCTGGGTGTGTGTTCAaggtctttgtgtgtgtgttacactaaatgcagagcacaaattcaattcaaattcataAATTCTGAGTATGGGTCATCATACTTGGCCACACGTCACTTCACTTCAGTAAATGTCTGCGAGACGCGGTTTGTGTGTTTAGATGACATACATCCTGATCTACTGATGCACAATTTGTCCTGTTTAGCActgtatgcataaaaataattgtgggtcctgaatttttttttgttttgatctaAGAAGTATAGCTCCTTTTTAcaccaaacattttaaagaacaaaa

Function

GO: NA

KEGG:

id description
K12494 PSD; PH and SEC7 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59589 lncRNA downstream 105110 29801194 ~ 29805802 (-) False G40268
TU59596 lncRNA downstream 105110 29801194 ~ 29805802 (-) True G40268
TU59587 lncRNA downstream 225185 29685128 ~ 29685727 (-) True G40266
TU59585 lncRNA downstream 263899 29646617 ~ 29647013 (-) True G40264
TU59465 lncRNA downstream 585838 29324114 ~ 29325074 (-) False LOC122345120
XR_006250938.1 lncRNA upstream 119959 30039454 ~ 30046148 (-) True LOC122344857
TU59775 lncRNA upstream 123145 30042640 ~ 30042867 (-) False LOC122344857
TU59777 lncRNA upstream 134117 30053612 ~ 30054797 (-) True LOC122345788
XR_006251033.1 lncRNA upstream 134134 30053629 ~ 30054797 (-) False LOC122345788
TU59797 lncRNA upstream 186347 30105842 ~ 30106738 (-) True G40422
XM_043238807.1 mRNA downstream 30809 29859552 ~ 29880103 (-) True prrc2b
XM_043238808.1 mRNA downstream 30809 29861277 ~ 29880103 (-) False prrc2b
XM_043239186.1 mRNA downstream 63922 29838639 ~ 29846990 (-) True fam78ab
XM_043238496.1 mRNA downstream 212286 29673233 ~ 29698626 (-) True gpsm1b
XM_043238497.1 mRNA downstream 240727 29661018 ~ 29670185 (-) True ak1
XM_043238646.1 mRNA upstream 5207 29924702 ~ 29928675 (-) True LOC122344966
XM_043238641.1 mRNA upstream 9328 29928823 ~ 29943177 (-) False sapcd2
XM_043238640.1 mRNA upstream 9328 29928823 ~ 29943177 (-) True sapcd2
XM_043238642.1 mRNA upstream 11179 29930674 ~ 29943177 (-) False sapcd2
XM_043238643.1 mRNA upstream 47912 29967407 ~ 29970909 (-) False LOC122344964
XR_006251000.1 other downstream 255851 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 420708 29460585 ~ 29490204 (-) True G40182
TU59335 other downstream 1646208 28255828 ~ 28264704 (-) True G40080
TU59237 other downstream 2015458 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 2512192 27382921 ~ 27398720 (-) True isca1
TU59650 other upstream 6890 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 172454 30091949 ~ 30093513 (-) False rnf170
TU59791 other upstream 172454 30091949 ~ 30093513 (-) False rnf170
TU60232 other upstream 681406 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 685349 30604844 ~ 30613141 (-) False fubp3

Expression Profile