RNA id: XM_043238652.1


Basic Information

Item Value
RNA id XM_043238652.1
length 2175
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122344972
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30576288 ~ 30580328 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGGCAAAGACGTTTCTTAGAAATATTATGCGTACGATCAAATCTATGAAGAAACGAGGCCCTGAGATCTACACGAGAGAGACTCCTTCACCGCTTCGTTCATTGATTTCGTTCACGTTCAGAAGActaacacacaaaaatgaataaatgaaatgtaaacagTGTTTAGTCCCAGACTGctttgtgttgttaaaagcactaaatAGAAATTGGAGCAGTtctgtttaaataattgttGTAAAAATAGCTGTTTAACTCTCTCTGTTATAATTgctttttacattctttttcaATTCAAGCTAAAACTTTTGCTGTGCATGTATATATCAGATTTTCAGACTGGGGGTTATTTCTCCATCTCaagatgttttgtgtgtttgaggaAAGCTGCTGTTGGGTTCAGTTCAGACTGGATGGTGCCGGTCAGGagagctgaccaatcagagacgCCGTTCTTGATGATGTTCACGTCATCAATCTGAGAGACGCTCTCTAGATCATTCCAGCTCCAGCCTTTCCTGTGTCCTGTGTGTCTCCGGAGAAGAGAAGAAACTCGGACGTAAAGGAGCATGTCTTTGAGCGATTGGCTCTACCCCGGAAATCCCAAAAGAAGGGAGAAGGTTATCCGCAGGAGTCAAGAGCTTCTTGAGCTGATGAAAAACAACTTTCGAGCCACCAACAGTCTCTCTGAGATCGTAAATAAGCACCTGGGTTCATCGTTCGACCCCATCGCTCTGGACGAGAGAGCCACCGTGAAGGAGAACTGTGAAGTGATGATTGAACGCGTGAATCAGATCCAAGCTAAAGTCGAGGAGGTTAACGAGGAGCTGAAGAATAAGCTGGATCCTGCCATGTATGAGCAGCTACAAAAAATGTCGTTCCACGACCTCAAAACTCTTTCGGTTGCTCAGAAACGTGTAATCTCCTCAACCTGCCAGGTTTCAGCCGCGATTATAGTGACggttctgatgaaaaaaatacgCGTTCTGACGAACATAACGTCCACGTGTGTTAGAGTTGTGGGAGGGATGATTGCCACCTTCGTGGTTGGGCTGTTAATCGATTTGATCGCTTCGGCTATCATAGGGCATTATGAGCGTAAACATCTGGAGGAGGCCCTGGAAGACCACGAGAAGGTTTTGGTAGAGTTCAGGCCAGCATCTGAACAATACCAGGACGCCATAGCTGAAGTGAAGGCTgtgattgcatttttataagAAGGAATACACTCTATATACAAATAACAGattgaaagcaaaaattatgtctcattttaaatgagtaataAAAACTGAAGCCAGAAGAATAATGTTCCTGTGgtgaaataaatgattagtGATACCTTCAAAAGACTTTCAGATTTCACCTTAGCAAGTCGTAgattgctgttttatttatagaacACTAATTTCAATCCGACAAAAATATTTGCTGTAATCGAAAACATGCACGCAATTAACTTTACTCCTAAAAGCATGCACGGAATTGAGATGGATGAGCTTGAAATAAACTGCAGATTCAAACATGGTCTCGTTTATTAAAGGAGAATATTTCACATGCGTCACAGCCATCTTCAGGTATGGAAATGTGGAAAAGAAAGCTAAAGCTCCAATCTCCTCGTGAAAAAGTGTCTTGGTGAAGCTCGACGTCACACTACCAATATAAACATATCCTTGACTTATATCCCTAGACATCTACACGGCATTAGAGCAGCatgctttcatttttcaatgtcttcaaatatttgttttggttaaTTTTTTACGTGCTAACATGAACTGTTTACTGAAATgtagttcagttcagttcagttttggTACGTCAGTCAGATTCGATCCTTTCCTTTTCACCGCCGcacataatattaatgataGTGTCTTGAGAGGGACTCTCTTCGGGGAAAGGGAAATAAAAACCAATGTGCTTTTCCTAAGAgataatgagctctgctgatcAAActctgcttttttaaatgtgagcTACTTTCAATTAAAGAATGCATAACAGGAACCAAATAAATCAAGACTGATGGCTTGTAGTACATGAAAAACTCAATTAGAATGTGATACAGAACCAAGACTTTCCATCACTTTTGGGACACAAACAGGAGCAGAGATAAgtacttctgttttttttataggatTGAACTGTAATTATTTGTCAGCCAGACTAAA

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60224 lncRNA downstream 6188 30567251 ~ 30570100 (-) True G40698
TU60183 lncRNA downstream 10132 30565684 ~ 30566156 (-) True G40672
TU60181 lncRNA downstream 11911 30564117 ~ 30564377 (-) True G40670
TU60202 lncRNA downstream 57833 30516065 ~ 30518455 (-) True G40684
TU60191 lncRNA downstream 63318 30504796 ~ 30512970 (-) True G40680
TU60227 lncRNA upstream 9869 30590197 ~ 30590640 (-) True G40701
TU60251 lncRNA upstream 50700 30631028 ~ 30733360 (-) False G40711
TU60254 lncRNA upstream 98830 30679158 ~ 30731238 (-) True G40711
XR_006251069.1 lncRNA upstream 128445 30708773 ~ 30710678 (-) True LOC122345983
TU60290 lncRNA upstream 128542 30708870 ~ 30709891 (-) False LOC122345983
XM_043238655.1 mRNA downstream 33848 30540497 ~ 30542440 (-) False LOC122344973
XM_043238653.1 mRNA downstream 33848 30540497 ~ 30542440 (-) True LOC122344973
XM_043240129.1 mRNA downstream 38373 30535834 ~ 30537915 (-) True LOC122345715
XM_043238953.1 mRNA downstream 52869 30520606 ~ 30523419 (-) True LOC122345124
XM_043240155.1 mRNA downstream 65009 30491031 ~ 30511279 (-) True mbd2
XM_043240921.1 mRNA upstream 10515 30590843 ~ 30613109 (-) True fubp3
XM_043240479.1 mRNA upstream 41876 30622204 ~ 30644747 (-) False ass1
XM_043240478.1 mRNA upstream 41876 30622204 ~ 30644737 (-) True ass1
XM_043240481.1 mRNA upstream 41876 30622204 ~ 30644730 (-) False ass1
XM_043239943.1 mRNA upstream 65958 30646286 ~ 30652310 (-) True surf4
TU59790 other downstream 482775 30091949 ~ 30093513 (-) False rnf170
TU59791 other downstream 482775 30091949 ~ 30093513 (-) False rnf170
TU59650 other downstream 649455 29926385 ~ 29926833 (-) False LOC122344966
XR_006251000.1 other downstream 921227 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 1086084 29460585 ~ 29490204 (-) True G40182
TU60232 other upstream 20573 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 24516 30604844 ~ 30613141 (-) False fubp3
TU60256 other upstream 50700 30631028 ~ 30696688 (-) False G40711
TU60253 other upstream 70613 30650941 ~ 30696688 (-) False G40711
TU60266 other upstream 209305 30789633 ~ 30792719 (-) True G40713

Expression Profile