RNA id: XM_043238673.1


Basic Information

Item Value
RNA id XM_043238673.1
length 2481
RNA type mRNA
GC content 0.46
exon number 7
gene id kctd10
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5648255 ~ 5653029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTTCGTGTATttgcagcaaacagccaataaGCGCGTGACCTGAAGCACCGTGCACGAGTCTGGGTTGCGACCGGAAGTGATCTAATTCCCGTTCCAAGAGGCCCGAAAGACTCGGGGAATTTCTatgGAAGAGATGTCAGGAGAAAGTGTGGTGAGCTCGGCTGTGCCGGCAGCTACAACACGGACCACCTCCTTCAAGGGGTCCAGTCCCAGTTCCAAATACGTGAAGCTGAATGTCGGGGGAGCGCTGTACTACACCACCATGCAGACCCTGACAAAGCAGGACACTATGCTGAAGGCCATGTTCAGTGGGCGTATGGAAGTCCTCACTGACAGTGAAGGCTGgattttgattgacaggtgcgGGAAGCACTTTGGGACCATCCTGAACTACCTGAGAGATGGAGTCGTCCCATTACCTGAGAGCCGTAGGGAGACGGAGGAGTTGCTGGCAGAGGCAAAGTATTACCTGGTGCAGGGCCTGGTGGATGAGTGTCAGGCGGCTTTACAGAACAAAGATGCGTATGAACCGTTCTGTAAAGTTCCACTGGTGACGTCGTTGAAGGAGGAACAGAGGCTCATTGCCACCGCAAATAAGCCTACGGTCAAACTGCTGTACAACAGGAGCAACAATAAATATTCGTATACAAGCAACTCCGATGACAACATGTTGAAGAACATTGAGCAGTTTGACAAGCTGTCTCTGAGGTTCAACGGCCGAGTGCTTTTCATCAAGGACGTGATCGGTGACGAGATTTGCTGCTGGTCCTTTTACGGCCAGGGCAGGAAGATTGCAGAGGTGTGCTGCACGTCAATAGTCTACGCCACTGAGAAGAAGCAGACAAAGGTCGAGTTCCCAGAGGCTCGCATCTATGAAGAGACCCTCAACATCTTGCTCTACGAGTCTCAAGATGGCCGTGGACCTGACAATGCACTGCTGGAGGCCACAGGGGGCGCTGCGGGGCGCTCCCACCACATCGACGAGGACGAAGAGAGGGAGCGCATTGAAAGAGTGCGGCGGATCCACATCAAGCGCCCCGATGACCGCACTCACCACCACCAGTGACCCCGCCGTTTCCCATCTATCCAGTGCCTTAACGACTACCAGCGCTTCGGTTACGCTCCTCTGTTTGCACACGGACACGTCACTTAGGTTTATCCCGAGTCCGTTTCCGTAGAGACAAAGGGATGCTCGCAGAACGGCTAGTATTGATAATGTTACACGACCGTAGCATATAGGGCAGTGCGACATTGGTCTCGAACGTCAGCTGTGCATTTTCAAGGACCCCGCTAAAAAGATACCATCACGGTGTAAATGAGAAATGCGCAACAGACGGCTTTACTGCATTTAAGACATTCCCTGAACTTGTCGCCCTGTTTGCTATTCATGAATCGAATTCCAACGAAACATATCAAGTCGATCAGctaaactgttgtttttattataggTTTGCAGCCAATGGATATCTTACAAGTTTAGTTGCCTGCCGTAGTATTTTTGTACTATGTTATTTACcatattgtttgtttgagtgAAGACTGTAGGGTTTCTGGTGCCTTATAGattaattctgttcttttttttgtgtgtgtgtattctgtgAAAGACATtgagtttttgtgtcttttGAGTTTAGTTTACTCTTTTTCTTCTCGTTTTAGTTTGCTTTGAAGTGTTAGAGCCAGGATTGCACAGCGCTGctagtgtgcgtgtgtgagattCAGGAAGTTGAAGCTATCTTGAAAATGTCGGTGTGGTTTGGCAGACAAGTGATCAGTGAAGGAGGATATTATTATTGCCTTATGAGAAGAATTCAATCCGTAATTACCCTATTACTATACTCATTAGAGCAGAGTGTCCGAATCTGtctatattcattttattgtgcTTGCGCAAAAACACTTATGCACGCTTGAAGATTGAATGTGCTGGATTTTTTTTGGCAGGTCTGTATGAGTTTGGCCAATAGAGGGCAGTGTAATGTTACGCCGTTTTCTCTCACATACATGAGGAGGCACTTTTCAAGCAGTAATTGTCATTTTCTATCCCCTTTTGGCCACAATCAGTAAAATAGATTATGCTATTAAATACCTTTCTGCTGCGCTGTATTAAATTCCATCAAGTTAATTACGCTTCTGTGGTTCTGTAAGGGATCTCGTTCAAGCAAAGAAACTGAGATGCAGTCAGAAGCGTTCGGATGTATATCTGTAATTGGGAAATGGACACCAAGTATGAGTGTAATCGGAGACCGGACCACGTCAGAGATGCACGAGAGTATGGGCTCTCCTCAGCTGCAGCGTCACAGATGGTTTGCGattgattgttttattaaaggtgtatttaaacaacaacaacaaaaaaaaacctatgaAATCTATAATACTGTAGAGAGGTTTGTACAGACGTgcacatgaataaaatgttttacatacaaattatttatacacgcgTTATCACAAATAAATTTGTAGATCAAA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49227 lncRNA downstream 27550 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA downstream 27550 5619617 ~ 5620705 (-) False G33423
TU49210 lncRNA downstream 46051 5601409 ~ 5602204 (-) True G33409
TU49166 lncRNA downstream 53081 5588045 ~ 5595174 (-) True LOC122344983
TU49238 lncRNA upstream 1051 5654080 ~ 5654764 (-) True G33434
TU49258 lncRNA upstream 26654 5679683 ~ 5684284 (-) True G33446
TU49417 lncRNA upstream 243099 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 292960 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 300247 5953276 ~ 5959213 (-) True G33544
XM_043238672.1 mRNA downstream 18969 5621069 ~ 5629286 (-) True foxn4
XM_043238962.1 mRNA downstream 193499 5435977 ~ 5454756 (-) False LOC122345133
XM_043238964.1 mRNA downstream 193499 5435977 ~ 5454756 (-) False LOC122345133
XM_043238959.1 mRNA downstream 193499 5435977 ~ 5454756 (-) True LOC122345133
XM_043238960.1 mRNA downstream 199059 5435977 ~ 5449196 (-) False LOC122345133
XM_043238430.1 mRNA upstream 15764 5668793 ~ 5671129 (-) True mmab
XM_043239673.1 mRNA upstream 167323 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA upstream 167323 5820352 ~ 5842995 (-) True trpv4
XM_043239675.1 mRNA upstream 167323 5820352 ~ 5842993 (-) False trpv4
XM_043240923.1 mRNA upstream 190649 5843678 ~ 5849639 (-) True gltpa
XR_006251120.1 other downstream 216861 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1025197 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1455174 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 303270 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1171142 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1270401 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1277843 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1468693 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile