RNA id: XM_043238680.1


Basic Information

Item Value
RNA id XM_043238680.1
length 1705
RNA type mRNA
GC content 0.41
exon number 1
gene id b3galt8
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9105500 ~ 9107204 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTCCTCAGCTATGTACCTcggttttatttagtttaaacatGCGAAAAAGATCGCAATATAAACTTTTGAAATACTTTGCTGTAGCTGCATTAATCGCACTTGTGGTTATCCTCGTTTTTACCAGCAATATACTGCCGTTTCCACCGAAGAGGACTCCAGTACCTCGGGAGCTCTATGAGGTGATCTCACCATCAACCTATAACTTCATCCTGAACCAGCCAGAAGTGTGTGAGAAGAAGAGTCCTTTCCTGGTCCTTATGATCCCGGTGACTCTCAAGGACACGGAGGCCAGGACTGCTATTAGAAGGACATGGGGTCAAGATGGCTCGGTTCCCGGTGTGaccattttgcatttgtttgtcatTGGTCGGCCAGCTCAAAGTGACCCGGTACGGCAGGAGCGCCTTGAGAGGGAGAGCGAGGAATTCGGCGACATCATTCAAATGGACTTTGTGGACAGCTACCGTAATCTCACCATCAAGACGATGATGATCATGAACTGGATAGCCACTCACTGCCAGGCTGCCTGGTACGCCATGAAGATCGATGCAGATATCTTTCTCAATGTACGTTACCTGGTGGACTACTTGCATGACCGAAGCGAGTCCTCGAGGAAAGACTACATCACTGGATCGGTCATCTCAGATGCCGTTCCTCACAGGGACAGCTTCAACAAATGGTACATCTCAGAGGAGCTTTACCCAGACTCCTGGTATCCTCCATACGTGTCTGGAGCTGCGTATGTCTTTTCTACTGACTTGGCCAGAAAAATATCCTCTGCCTCTAGATTTGTGAGACCGATTCCGCTTGAAGATGTCTACGTGGGGCTGTGCCTGCAGATTCTGGGTGTAAAACCAGTTTATGCAACACAAATGTGGGGATTTAGAAATCTTTTTGAGGTGCGCCGACTTAAGTATGAAAGGTGCACCTTTGCCAAGCGCATTATAGTGAACGGCTTTAACCCACAGAATCTTCTCCACATTTGGCATGACTTTCAGAAGTCTTATTTTAcatgttgatatattttaaataactaaaattgtatttgaagTACCTTGAAgctgctacatttatttgtatttataacaaTTTGCTAGTACTGTTCCTTTAGCAAAGTTCAGGCCAGGAAAAAGATAGCTGTTGAGGTGCGGTATGTAGAAAACAATGAcatataagagaaaaaaaaaaatctatatagaGTAGGAggaaggtaaataaataaataggagaTGTGGAAGTGTAAGAggttatgtaaaaataatttttagatatatttcaaagattttttatttaatgctggCTACGGGCCACAGACCTCAGGTATTATAAATGATCCCTCACCTATTTCATAGTGTTTTTATACTTCTGCCATTTGGAAAAATACATACACTTTGCATTGGGAACGAGAGGTCACTTATTGGAGTCCTTAAGAAGAGGAGATGCTGCTGTAATACGTccaagatttttcttttttgtgtgagTCTGTATAAATAGCAATCTCTGTATCTTTCAATTTAGAAATCATAGCTTGCAGATATATATGAGCAGTTTATTATCCGTATTGTGCTATTTGAAGCTTGAGATTTTCTTTCTGTACTGAAGTTGCACATATCATTATAAAAGTGCTTTACCACCCAAGTATGAactgtaaacaataaaaatattatgtatttatatttcttgtGTACTACGTTTTGAGATGC

Function

GO: NA

KEGG:

id description
K02175 BRN; beta-1,3-galactosyltransferase / beta-1,3-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50809 lncRNA upstream 104280 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA upstream 104280 8993896 ~ 9001220 (+) False G34480
TU50811 lncRNA upstream 104280 8995398 ~ 9001220 (+) False G34480
TU50814 lncRNA upstream 104280 8999260 ~ 9001220 (+) True G34480
TU50798 lncRNA upstream 166130 8938265 ~ 8939370 (+) True G34472
TU51097 lncRNA downstream 139706 9246910 ~ 9248013 (+) True G34689
TU51096 lncRNA downstream 141055 9248259 ~ 9251790 (+) True G34688
TU51161 lncRNA downstream 253655 9360859 ~ 9433507 (+) True G34725
TU51186 lncRNA downstream 371401 9478605 ~ 9565907 (+) True G34747
TU51300 lncRNA downstream 657932 9765136 ~ 9765347 (+) True G34840
XM_043240196.1 mRNA upstream 634 9072780 ~ 9104866 (+) False tncb
XM_043240195.1 mRNA upstream 634 9072781 ~ 9104866 (+) True tncb
XM_043240197.1 mRNA upstream 634 9072781 ~ 9104866 (+) False tncb
XM_043240198.1 mRNA upstream 634 9072781 ~ 9104866 (+) False tncb
XM_043239829.1 mRNA upstream 89119 9008526 ~ 9016381 (+) True traf2a
XM_043240637.1 mRNA downstream 745 9107949 ~ 9123877 (+) True zgc:162952
XM_043240638.1 mRNA downstream 746 9107950 ~ 9123877 (+) False zgc:162952
XM_043240551.1 mRNA downstream 171913 9279117 ~ 9287528 (+) True zgc:110329
XM_043240186.1 mRNA downstream 187992 9295196 ~ 9316541 (+) True slc4a5a
XM_043240185.1 mRNA downstream 187992 9295196 ~ 9316541 (+) False slc4a5a
TU50789 other upstream 233982 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 801349 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1094901 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1307532 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1538924 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 689186 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 957013 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1621914 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1819619 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1939276 11046480 ~ 11062314 (+) False map7d2a

Expression Profile