RNA id: XM_043238693.1


Basic Information

Item Value
RNA id XM_043238693.1
length 2259
RNA type mRNA
GC content 0.43
exon number 2
gene id rhogc
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13409262 ~ 13411836 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aGTTCGGATTTTTACTCTGAACTACACTACATTTCCCATAAGCCTTTGGGACATGGGCGTGTTCCTCAATGTCGTCTCCGTTACCCGTAAGTTGAAGAATGAGCCAGTGAGAGAAAAGGACTGCGAATCACatagaaacatttgttttaaatagcacAAAATATGTCCGTTTAAAATTATTTCGAGACTTCGTACGTGTGTACAAGTGTTGTACGGTTGTTACACATAGTTACAGACCACCGAGAGTTGTTGGTCCATGTTTAATAACTGATTAATGTGAGACTCATCCGCTAGTCGGTTAGCAAAGCGCCTTTGCCGCTGCGATGATGGAAACTTGAGCAGCTCAAAGGAAACACTCATCCAGCTCTTCAGACCATCCAAACACAggGTCCCTGTGCCAGGCAACAAAATGCAGACGATAAAGTGTGTTGTTGTTGGTGATGGTGCAGTGGGAAAGACCTGCCTGTTAATCTCATACACTACTAATGCCTTCCCAGACGAGTACATTCCTACGGTTTTCGACAACTACAGCACTCAGACCTGTGTGGACGGCCGGGCCGTCAGCCTCAACCTGTGGGACACGGCTGGTCAGGAGGAATATGACCGCCTGCGAACCCTCTCTTACCCACAGACGCATGTCTTCATCATCTGTTTCTCTGTGGCCAGCCCTTCCTCTCACGCCAATGTCCGGCATAAATGGCACCCGGAGGTGTGCCACCACTGTCCTGGTGTGCCTGTGTTGCTGGTAGGCACTAAGAGAGACCTGCGGGGGGACAAGGAGACCCTGGAGAAGCTGAAAGAGCAGGGGATGAGTCCCACCACTCCGCAGCAAGGCAGCGCATTGGCCCGCAGCATCGGTGCGGTGCGATATCTGGAGTGCTCGGCCCTTCTGCAGGAGGGCGTCAGAGAGGTCTTCAACGAAGCAGTCAGGGCTGTTCTCTACCCCAATGCCAAGAAGCACAGCAAGAAATGTGTGCTGTTATAACTTCGAGAgggtgtgtgcgtgagagattTTATTGAAGGGTGGAATTTCAGTTAGTCATGTGATTGTCTCTGCcaatgtgtgtttctgtcactTTTTGTTCATATCTCTACACTACAGTTAGCAATAGGTGCACAGACTGTTAAAGAGGAAGACTTGAggctgcgtgtttgtgtgtatttgtgtttcaaCTTTCCATACGTATTCAAGACAGAAATATGGTGTTTTGTGTTAATCTTAAGTCAGGCAGACCGAGGCAGTGGAGTGGAGTGGATTTGTCTGAAGGACTAACAGGCATTGACAACTTCAGCCTTCCCATAAGGCCTTAAAACCCcatcatatttttttaggaGTCACTCAGAGGATTTTTCATGCACCAAAGTGTTAATTCAGTCTAAATTTAGACTGGGTGTCTTTTGAAGGTGCTGTCTTTATCCTACCGCATCAATAACACAATTGTCAGGGCTCACAATTCACCTGATATGcgtgttattttaatgtgagaTTCTAAGACTTGATGACCTACACTTACCACAACATGCCATTTTTCTTGTATTGTTGCCTTTGTAGAGTTGATCGACTTTTAAATCAGGAAGTGCTGTGGAATCCCAGCGTGCCTTTAGTGCTTGGCCCCTTCTCTGACATCTCATAAACTCCTTCCTCTCTGCTCATTTCATCTAGGGTGCTACTTAGGGTGCCAGTTGACATTTATTGCTGGAAAGGACTGTTGAAAGTTTACAGAGAGCTTTTGTAGCTCACCTGCCTTCTATTAGAGTTGTAAATGAAGGGATATAGTGCTGTTTTATAACACTCTTGAGGTAGAAATGAAGATCTTTGTATTCGGCCCACTGTGCCTGAATCCTCACAATTTACAACCCTGTTTTTGAAACTGAAGTGCCactaatattttgtattatttgtattttaccaTGAATGTTGATCCACTCCAATGAAGTGCCCTAATAAGAACTGACGGAGGAGATAAACACTCTGTCTTTAATCTCCGTTGCAATGAAACATCCAAACTAGTTAATGTGCACAAACATTCAGGTTTATACTTCATTTGGGtccacatttacattttatatattgaatGTCTACTTTTTATATGATaaacatcagtgtttttttttttttccaacaattttgtttttaggaCATCAATAACACACCAAAATTGGctcttttattaaaactgtttttatttttttaacctgtcattattttaagaatatacCTCCACTTGCATGAGAAAATAAACcagttttaaagtgaaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53349 lncRNA downstream 35507 13370210 ~ 13373755 (-) True G36200
TU53204 lncRNA downstream 86040 13322931 ~ 13323222 (-) True G36108
TU53200 lncRNA downstream 91800 13317235 ~ 13317462 (-) True G36104
TU53144 lncRNA downstream 300314 13108699 ~ 13108948 (-) True G36063
TU53126 lncRNA downstream 352557 13055569 ~ 13056705 (-) True G36048
TU53392 lncRNA upstream 808 13412644 ~ 13414387 (-) True G36230
TU53391 lncRNA upstream 3040 13414876 ~ 13418962 (-) True G36229
TU53385 lncRNA upstream 34785 13446621 ~ 13447119 (-) True G36227
TU53376 lncRNA upstream 150818 13562654 ~ 13563898 (-) True G36218
XR_006250978.1 lncRNA upstream 207190 13619026 ~ 13643314 (-) True LOC122345175
XM_043239924.1 mRNA downstream 1315 13392656 ~ 13407947 (-) False taf1
XM_043239921.1 mRNA downstream 1315 13392656 ~ 13407947 (-) False taf1
XM_043239922.1 mRNA downstream 1315 13392656 ~ 13407947 (-) False taf1
XM_043239923.1 mRNA downstream 1315 13392656 ~ 13407947 (-) False taf1
XM_043239919.1 mRNA downstream 1315 13392656 ~ 13407947 (-) True taf1
XM_043239503.1 mRNA upstream 105807 13517643 ~ 13521568 (-) True ckma
XM_043239657.1 mRNA upstream 153330 13565166 ~ 13568196 (-) True kptn
XM_043240104.1 mRNA upstream 167484 13579320 ~ 13582290 (-) False h3f3c
XM_043239037.1 mRNA upstream 200825 13612661 ~ 13618357 (-) True ftr84
XM_043239038.1 mRNA upstream 234812 13646648 ~ 13653051 (-) True il13ra2
unassigned_transcript_955 other downstream 33562 13375629 ~ 13375700 (-) True trnap-agg_13
TU53125 other downstream 354405 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 903304 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 1089577 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 1239935 12165410 ~ 12169327 (-) False sh2d1aa
TU53374 other upstream 167225 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 247241 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 248138 13659974 ~ 13699226 (-) False lrch2
TU53475 other upstream 305288 13717124 ~ 13718543 (-) True G36298
TU53529 other upstream 405906 13817742 ~ 13818942 (-) True G36336

Expression Profile