RNA id: XM_043238694.1


Basic Information

Item Value
RNA id XM_043238694.1
length 3068
RNA type mRNA
GC content 0.41
exon number 9
gene id tbx5b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11373802 ~ 11381783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACTTGTCTTATTTATGGAAGCCTGTTTTGAAGCAATGCGAACGAGCTTTTTTGAGCGACAGAGGACGCGCGTGCTCGCGTGCGTTCAATAAATAGATCAAATAATATTTCCAAAGTTATTACCGAGGGGATGTTGTTTTGCGTCACCAACGAACAAATACAAACGGACTCGagcagtgaaagagagagagagagagagagcgaggacAGAGCGCTCGCCTAGTTACCTCCTTTCGACCTCCTCAACTTTTAACCCCGGCGCGCGCAGCCGTCGCGCACAGAGATGTCGACGGAAAAGCGCTGATTATTTACCGAGCAACTTGGAGTCTACGCGTAAATTCGGCACCAGATATTTCACCGTAAACTCAAACGGGGATATGGCGAATTTAGAGTTTGGATCTCAGCAGTCATGTTCCGGCGGAGATTCCCCCGCGATGGGATTCGAGAAGGAGAAAGATCAGGGTCGGTGTAAAACCGGGTCTCCGCCGCTCCAAACTCATCTCTCCCATCAGGGTATGGAGGGAATCAAAGTTTATTTGCACGAGAGAGATCTGTGGGCGAAATTTCATGATGTCACTACCGAGATGATCATCACCAAAGCTGGCCGACGAATGTTTCCCAGCTACAAAGTGAAGGTAACAGGGTTAAACCCCAAAGCAAAATATATCTTACTGATGGACATTATTTCAGCCGACGAGCATCGGTATAAGTTTGCAGATAACAAATGGTCTATCAGTGGTAAAGCTGAGCCAGCGATTCCAGGCAGACTGTATGTGCACCCAGACTCACCGGCTTCAGGAGCTCACTGGATGAGACAGCTCGTCTCTTTTCAGAAGCTCAAACTCACCAACAACCACCTGGATCCTTTCGGACATATCATCTTAAATTCCATGCATAAATACCAGCCTCGCCTGCACATTGTGAAGGCAGACGAGAGGAACAGCTTTGGCTCCAGCAACACAAGTTTCTGCACACACTCGTTTCCTGAGACGACCTTCATTGCTGTAACGTCCTACCAGAACCACACAatcacTCAGCTGAAGATTGAGAATAATCCGTTTGCTAAAGGTTTCCGTGGAAATGACGATATTGAATTGCATCGCATGTCCCGTACACCAAGTAAAGAGTATCCTCTTGTACCACGTAGTACTGCAAGGCAGCGTGCAGCTCCGCCCTCTCCTGACTCCTGTCTCCCTGGGTCAGAATACACTGTGAACCAGAAGCCCAGTCCTGGCTACACCTGCTCCGACATTTCAGGTGACCACACCCACACTGAAACCCCTCCCACTCATGACCCCACCTACCACCTCTTCACCTACCAGCTCTCTCCGGAGGTGACCCCTGTGCACAGCACCCCCTGCGGTATGGACACCGCACAGCACCAGCCTTGCATGTACGGAAGCTCTCAGGTCAGCATGGAGGACCTCAGGTGGGCATCTTATACAGACAGCACAACTTACCAAAGCTTTTCTTCAGCTAAAGAAATGAGCGCGACTTTTGTTCCCCCCGCTGACCTCTCTCAGGAACTGTATCCACAATACACCTGTGAGGTGGGTGTCCAGTCACACTGCATGATGACTGATTTCTCACTTTATGCTTGTAATCGATCGTTTAGCCAAAACCACCAACCAAACAGCTGGTGTGGGGGGAGCTGAGCAAGTGTgcctgatgtgtgtgtatgtgtgtgtgtgtgtgttaaagagagagagaagaaaaggaaTGAAAAAGAGTCTGTGAATAACTGTGGTAAAATACTCAAAATTTTATCCTGAAATCACAAGATTGCATCTGTTTTGCTTCACAATTTCTAGCTTCTTGTGAATAAGGTCtagcaaattaaaatgacaaaaaattataaaaaaaatatttatttaaccttttcatatttacatcTTGCTAGAGCTTTAAAACGACAAATAAGAATCAAATTCAGcatcaaaattaatataatttgcaATACAATATCTACAATTCTCATTTTgacatatttgtatgtattttctcagcatttgtataatttttgtatatactttttacaatagcattttatatttgctCATGCCTTTGTCatctacataaataaaatgattattaattaataataaattaataaaataataataataataattaaaatagattacaaatacatatacatgtatacatacatagtCACTATGGAGCAAGTGGCAAATAATAGGATTTCAGGATAAAAAGTTgagattttcatttaaaatagacagAATTTCCTCTTAAACCCTGTAATGAATGTTTGCATGTTCCATAAGTCTccagtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagaatTTCTGTACATGTGTACCAAATATCTTCTAGTAAATATGCGTGAATCTCTGTTACCATTACTAAAGTTTTTTTCATCAAGATGAAACTACACCAGGAATTTAAAAAAGGGGGATTACGTTAAGGAGGTGGGCTGCTTCATTGCGGCCAGTATCTGTGAAAATTCATgaagaactatttttttttactatttcacTTAGGAAATGCTAACACTAGCAAACCCAAATGCAAGAAACTTCCTGATTTAAAACTCTTAAACTTCCTGTCACACAATGTCTAGCTTCAGGTTGGGgtcctttattttgtttattcttaCTCTATTCTGATGAGAAAAGGGAATGCTGGGTACTGCACGTGTCACAGTCCGTTAAGGGAGCAGTGATGTTACCAATCCTGTCATGGCCCAAGGCAAGAGAtacggagagagagacagagaggaggggAGGCATCAGCTGGACATTTATTTATAGACACACCATGCAATAAGAATTTCATGAGTGAAACGtagtcattttaaagaaaacttttaatGTTGTGAAATTCATGTTTCcattatttataatgatgagctatttattaattttgagtTCACAATTTGTGTTTGctgatatttatttgtaaagcgtttttaaatatattgagcGGTTTGCTTTACCCTTGACAAATGTAAAGTTTCTGTATTTTGTGAAGGTGTTTTCTGAAACTTGTTTGAATatgaagctgaaataaaatgtt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003007 heart morphogenesis biological_process
GO:0033339 pectoral fin development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 43436 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 43436 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 60972 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 123796 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 152911 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 289174 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 310767 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 314408 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 316165 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 316165 11697948 ~ 11699511 (-) False G35599
XM_043238874.1 mRNA downstream 5188 11365078 ~ 11368614 (-) False cfap73
XM_043238875.1 mRNA downstream 5205 11365078 ~ 11368597 (-) True cfap73
XM_043238866.1 mRNA downstream 11867 11348628 ~ 11361935 (-) False tpcn1
XM_043239970.1 mRNA upstream 897 11382680 ~ 11388895 (-) True prps1a
XM_043239971.1 mRNA upstream 897 11382680 ~ 11388894 (-) False prps1a
XM_043239972.1 mRNA upstream 897 11382680 ~ 11388893 (-) False prps1a
XM_043239973.1 mRNA upstream 897 11382680 ~ 11388892 (-) False prps1a
XM_043240381.1 mRNA upstream 7537 11389320 ~ 11399607 (-) True nexmifa
TU52116 other downstream 447639 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 499738 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 912093 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 1038460 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1971179 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 38172 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 82048 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 201997 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 419531 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 783627 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile