RNA id: XM_043238696.1


Basic Information

Item Value
RNA id XM_043238696.1
length 1882
RNA type mRNA
GC content 0.46
exon number 13
gene id usp39
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27288172 ~ 27293486 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGGGCGGGAGTTTTGTAGCGCTCGCAGAAGACGTTTGAAAAGTGTTCATTCAACACTTAACACTAGAAACGATCCCGATATTAAACGTAAAATGATCGCAGGCGTGAAACGGGAGAGGGATGTTGATGACGACGAAGAGGAAGAGGTGCGTGTGAAGATTGGTCGTTCTCATGGTGTCGAAGATAAAAGAAGCCGCCATTGTCCATATCTGGACACTATCAACAGGAGTGTTTTGGATTTTGACTTTGAGAAGCTTTGTTCAATCTCTCTCTCCCACATTAATGTCTATGCCTGTCTGATCTGTGGGAAATATTTCCAAGGTCGAGGTCAGAAGTCTCACGCGTACATCCACAGTGTTCAGTTCACACACCATGTTTTCCTGAATCTCCACACATTAAAGTTTTACTGCCTGCCAGACAATTATGAGATTATTGACTCCTCATTAGAGGACATTACGtaTGTGCTGAAACCCACGTTCACCAAACAGCACATCGCTGGTCTGGACAAGCATGGAAAGCTGTACAGAGCCTACGATGGCACCACCTATTTGCCAGGAATTGTGGGTCTCAATAATATTAAGGCCAATGACTATGCTAATGTGGTTTTGCAGgCACTCTCAAACGTGCCTCCCCTACGGAACTACTTCCTTGAGGAGGACAACTACTGCAGAATCCGCCGGCCGCCGGGTGACATCATGTTTCTGTTGGTGCAGCGCTTTGGGGAGCTCATGCGTAAGCTCTGGAACCCGCGCAACTTCAAAGCCCACGTGTCGCCACACGAGATGCTGCAGGCTGTGGTGTTATGCAGCAAAAAGACCTTTCAGATCACTAAACAAGGGGACGCTGTTGACTTTCTGTCCTGGTTTCTCAATGCATTGCATGGCGCTCTTGGTGGGACAAAGAAGAAAACATCAATCGTCACCAAGGTGTTTCAGGGGTCCATGCGAATCTTCTCAAAGAAGCTGCCTCATCCAGATTTGCCTGCAGAAGAGAAAGACGCCCTTCTGCTCAAGGACGAGTACCAGGAGAAGATGTCTGAGTCCACCTTCCTGTACCTGACGCTGGATCTGCCCACAGCACCCCTCTACAAAGATGAGAAAGAGCAGCTCATTATTCCTCAAGTTCCTCTCTTCAACATCCTGGCTAAGTTCAATGGAAACAATGAGAAGGAGTACAAGACATACAAAGAGAACTTTCTGAAAAGGTTCCAGCTCACCAAACTTCCTCCGTACCTCATCTTCTGCATCAAACGATTCACAAAGAACAACTTCTTTGTGGAGAAGAACCCGACTATTGTCAACTTTCCCATCACGAACGTCGATCTGCGCGAGTACCTGACCGAAGAGGCGCAGGCTACAGAGAAGATCACCACCTACGACCTGGTGGCCAATGTAGTGCACGATGGAAAACCTTCTGAAGGGTCCTACAGGATTCATGTTCTGCATCACGGCACAGGGAAGTGGTACGAGCTTCAGGATCTGCAGGTGATTGATATCCTTCCACAGATGATCACGCTCTCGGAGGCGTACATACAGATTTGGAAGAGACAAGATAAAGACGAGGGAGCAGAAAGCCATACAGGGGCATAGGAGGCCCAAAAACACAGCATTGGTGAGATGTAATTGAAAGGATTCATTTCATTGCTGCACGCCAGGGCTTTAAGGAGGAACAGACTTATGTAGAGTTACAATGAAAGAAGACATTAAACGAAAACCCTGATGTTATATTCATGTAACTGCTGAAGAGTCTGGAAAGTGGACATTGCACATTTATGTGTTCTGctctgaccttttttttaattatttcagtttgattGCGGCTGTTGCTTGGCCTGTGTTGTTTGTAGGATGAAAtcttttaataaagttttcAAGACAATA

Function

GO:

id name namespace
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12847 USP39, SAD1; U4/U6.U5 tri-snRNP-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59046 lncRNA downstream 1978 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 20943 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 54010 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 62610 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 98950 27188850 ~ 27189222 (-) True G39857
TU59120 lncRNA upstream 245002 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 245454 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 356964 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 454974 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 602157 27895643 ~ 27895961 (-) True G40021
XM_043238698.1 mRNA downstream 7781 27277047 ~ 27280391 (-) True spaw
XM_043238359.1 mRNA downstream 115278 27168265 ~ 27172894 (-) True LOC122344788
XM_043239545.1 mRNA downstream 180793 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 180795 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 188453 27095380 ~ 27099719 (-) True LOC122345424
XM_043238697.1 mRNA upstream 8773 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 19403 27312889 ~ 27334798 (-) True inpp5jb
XM_043238855.1 mRNA upstream 50004 27343490 ~ 27389998 (-) True smtnb
XM_043238858.1 mRNA upstream 50004 27343490 ~ 27389997 (-) False smtnb
XM_043238857.1 mRNA upstream 50004 27343490 ~ 27389997 (-) False smtnb
unassigned_transcript_1081 other downstream 1176770 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1178602 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1186763 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1196176 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1198384 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 89435 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 595637 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 962342 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2167099 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2323513 29616999 ~ 29655061 (-) False eng

Expression Profile