RNA id: XM_043238698.1



Basic Information


Item Value
RNA id XM_043238698.1
length 1999
RNA type mRNA
GC content 0.50
exon number 3
gene id spaw
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27277047 ~ 27280391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATCATAGGCAATTTTGAATCAACAAGATCGTCTAACTTTGGGTGGCCCAAAATCAAAGGATGTCGCTGGCACGTTAGAGCACGAGAGTGTCACGCCTCGCGCAAATAAATGCCTGCACAGTTTCGAGAAGCAGTGAACTTGACAGCTCTGCTCTCCTCTGATGTGCTTCACGGATCAGAGGGATTCCGCGGAGACCACAGGATGGCAGGGGTCATCGGGGGCCAGCTGCGCACTTTAAAAGCGCCGTCCACAGCCCGGACCTCAGACGAGCCGAGAGGAGGAATCGGACGCTACAGATCGGTACCAGATCGAAAACTTTATTGATTCGCGATGGAAACCCTGCCAATCGTATTGCTCGCCGTCTTGACGGTTTCCTTGATGCGCGCTGGCTGCGTGAAGATCGATAATCGCGGCGCACTCGCGGGAGAACGCCGTAAAGTCTTCGCAGGTTCACATCCCGACTTCAGTCTCCAGTCGTATCCAAGGTACCCTCTCTACATGATGCAGTTATACAGAGACCTGGCAACTACTCCAGCCGGTGTAGACAACCCAACTCTTCACCAGTCTGACTTCGTCCTGAGCCTGGTCGCACAAGACTGTCATCAAGTCGGTGAGCGGTGGTCCGTCACTTTCGACATGTCCTCCCTCTCGGCGCGTGACAGCGTTCAGCTCTCGGAGCTCCGCGTCCGTCTTCCGGCGTTTTCCGCGTCCGGGCGCGTTACTGTGGACGTCTTCCACTTACGTAAACAGGGCTGCTCTGACTCTGCGACtgatttttgtcaaaataagcGACTTCTTATAGGCAGCATCAAGTCGGCTCCCGACACTTCAGCGTCGCCCTGGAGAGTTTTCAATGTCACGGAGTTATTAGAGCGCTGGTTGAATCAAAGAGCCGAAGAGATCCTGACGACTGATGCCGGAGAGGACGCCGGAAGCGGGGAAGGCTTACCTGGACCCGCTGCAGATAGCTGGCGAAGAAAAATCCAGCATCCCACAGCGGAACGGGTCGTGATTGTAGTtttctacaaaaacaaaccttcCCACAGCGGCCAAGCCTCCAGCTTGATCGATACAGCGACGCGCTCCAAACACGTCGTCCTGAACCGGGCGCCGGACGCGGCGCAGGCTCGCCGCCACAAGAGGAACCGCGTCGAACGGATGCGCGCCGCGGATGACGGGAACGCGACGCGAGCAGTGACGCCTCTAGAGCCGCGTTGCCGTCGAGTCGATATGTGGGTGGATTTCGATCAGATTGGATGGGATGAATGGATCGTGCACCCTAAGCGTTATAATGCGTACCGCTGCGAAGGAGAGTGCCCGAGTCCGCTGGACGAGTCTTACAACCCAACAAACCACGCGTATATGCAGAGTTTGCTGAAGCTGTACCACCCGGAGCGCGTTACCTGTCCGTCGTGTGTCCCCACGCGCCTCAGCTCGCTCTCCATGCTGTACTACGAAGGAGACGGCGTGGTCATGCGCCACCACGAGGACATGATCGTGGAGGAGTGCGGCTGCCAGTGAGAGCTTTTAGTGTTTCAGCGGGCGACTCTGATAAGCCTTCAAAGGTTTAATAACATTCCATGCCATTATTCTGAACTAAAGAACGTATTTTTGGACAGTCTTTCCAATGAGAACCGCTGAAATGCTGCGCAAAacgatatttaatatttaaaagacattttaaggagtgtttatttttatgtacatagGGTATGCATAGATTTCATTTAAGGAAATGTATATGTATTGCgataaaatgtgatgtttttttttttttctttttatcagcAGGCTTgataagtttttatatatataaaaaaagtaaaataactaataaagcaaaacattttttatttggttgACTTTGTACTTTGTAGGCGtcagcattttttatatattactacattattattatttgtatatcgttttgcttattgtttttcaaatctaaaatgttttaaaatgtaaaaggaagttgttaaattattaaagaatttgc

Function


GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU59040 lncRNA downstream 9818 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 42885 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 51485 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 87825 27188850 ~ 27189222 (-) True G39857
XR_006250928.1 lncRNA downstream 130085 27115967 ~ 27146962 (-) True LOC122344810
TU59046 lncRNA upstream 4791 27285182 ~ 27286194 (-) True G39893
TU59120 lncRNA upstream 258097 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 258549 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 370059 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 468069 27748460 ~ 27789829 (-) True G39964
XM_043238359.1 mRNA downstream 104153 27168265 ~ 27172894 (-) True LOC122344788
XM_043239545.1 mRNA downstream 169668 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 169670 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 177328 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 262549 27001647 ~ 27014498 (-) True LOC122345427
XM_043238696.1 mRNA upstream 7781 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 21868 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 32498 27312889 ~ 27334798 (-) True inpp5jb
XM_043238855.1 mRNA upstream 63099 27343490 ~ 27389998 (-) True smtnb
XM_043238858.1 mRNA upstream 63099 27343490 ~ 27389997 (-) False smtnb
unassigned_transcript_1081 other downstream 1165645 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1167477 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1175638 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1185051 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1187259 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 102530 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 608732 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 975437 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2180194 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2336608 29616999 ~ 29655061 (-) False eng

Expression Profile


XM_043238698.1 Expression in all Baseline Samples

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XM_043238698.1 Expression in each Bioproject

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XM_043238698.1 Expression in each Sample
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