RNA id: XM_043238710.1


Basic Information

Item Value
RNA id XM_043238710.1
length 3946
RNA type mRNA
GC content 0.36
exon number 8
gene id LOC122345011
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15605437 ~ 15611094 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAAACGCAGTGTTGTTCATTTCTGTTGCAGTTTCAGTGATCAGATGAGACCATGAGgcagtttgttttttctccttTGTGGATATTGTGCTGCTGCTGTCTTGTATATGTCAGAGGTCATGGTGTGTGTACTGTAGGGAATCTCATTAAAAGAATCAATTTAACCACAGAACTGAGTTCTGAAATCCTGCTGCCGTGTCTTTATGAACCAGCTCTCAAAGAATCACACCTGAACAAGGAATCATCTGCTGTCTGGATTCAGATTAAAACCAACACTGACCACATTGTAGAGATCAGTGTAAATGGTCAAGAAAGCTTCTGGAATAACAGACAGCATAGAATTAAGGTATTCAGAGAAGTCGCTGGCTCTGGAAACTTCTCTCTCCTGATTAGAGATGTGCAGCTGTCTGATCTGGGTCTCTACCGCTGTGAGATCTTCAGAGGCATCAACTGTTCTCTGGGCTATGTAGAGATAGAAATCAGTCTGGCCACTGTTGAGTTTTCACTGCTCAGTAACTGGCGTCTCATAGCTGCAGGTGGAGGAGGATTTCTGCTTCTCTGTCTGATCACTGTGTGCTTTTACTGTATGCTGGCAAAACGACAAACAGTCAATACATCCATCAACCAAACATCAGACAATTGCCATGATGTGGATGgacaaaaaaaagatgaaataacCTATGCATCAGTTGTCCTTAAATCACGCACTTGCCATGACAGTGAAGgACAAAACAAAGATGAAATAAGCAATGCATCAGTTGTTCCTACGTCACACAACTGCCATGACAGTGAAGgacaaaaaaataatgaaataacctATGCATCAGTTGTTATTAAATCACACAACTGCCACGACAGTGAAGGACTTATCAGCCCAGAGACGGACCTTTATGCTGCTGTCAAGcaaagagagagaagatgaaCAAGTGAGCGGcgaaacattcaaattaaaacactcaagaaaaaaaaacaattttattgatATCCATCCAAATATCCATCTTGTACTGTTTGATTTGAAGTATGAAGAATGATATATGATGTTTAATATTGTTACAGGGTATAAAAAAGGGTATAATTAATCGTATAAGGTCTCATGTTTGTCCATTGTGTATATCGTTTTTATCTcatgtatatttttgaaaggCGCACTCTTTGCTCAGCTGTACGAGTGTGTTGTAACTACTGTGGGTGGAGGGTGTGAAACTGAACTCTAGCTACTTTATCACTCAAACCACTGACATCTTTGCAGACAATGTGACAGAGCCACAGATGCAGCGGTAAGGCAGGATAAATGGTCTATCTGCTGGTCTATCACGTTGCAGATTTGAGAGTAGTATAAAGACAGTCCAGGCCAAGATGCTTAGAGAAAACCAGAGTGGAAATTCCCATGCCCGTGAGCTTCTTCACAAAAAAAGCTACAGCTTCTGTTTTGTCAGAGAGAGTGAAAATGTTTTGCGTGAAAATAATGTCTCACCtctggttgtttttttgtgcaattcCTGCCAAGACAAAAAGTTAATTAGATTAAGACAGgaaaacatgacttttaaaatgaaaaacaatggcCTATAAAGTGTCACtcttttttcaaatacattctTCTGTATGTTTTGTTGTAAGGCTGAAATTAAGCTCAGTGGCGTGTTACAATTATGTAAGTTGTCAAAGTACATTAGCTTTGACTTGTATCTCCAGTTTAATCACTACAGAGACGTCAGAACAAATGTTGGAAGGACTACATTTTAAGGCAacagtaaaagtaataatttgaaaataagaGGGGTTTTTCAGTAATGATGTTTCACAAGTCCACAAGAATACATACTGAGAAACAATATTCTctgtgcaaaaatacaaaattgtaaaatttatatataacactgttatattgtttataagAGTAAAGGGGATCCCGTTGTATTATGCAAAAGTGACAATTCTAGTCAACCAATCAAGATTCTGTAGGGAGGTTAGTGCCACCCTATTGGTACCCTTTGCTGTGCTAGGAACCCTTATGGAAGGGTACCAAAAAAGTGGTATGGTGTGTTTCACTATTTTGGTACCATTCACAACTTCTGACTATGGAAACGGACATAATTGAGTACCGTAGTGCTCAGTGGAAACAAGCCAATAGATGAACAAACATGATctataaaaggtacaaaatgcTTTTGCTTAGCTACACTTTTCAGAATCTAGATATTTgcccgcaaaaaaaaaaaaggatgctATTCAACTTGTGGCCGTTCGTTTTATTCAGAACACATCATCCTAGGACTTTGCTCAGAATTGTGGTGTTTTTCATCTCTGGTCGCTATCATGAAAAATTCTAAACATTGTGTAAGACTGAATTCATTTTAGTGGATGTTACAACACTTTAAGCAtctttaaatgagaaaaatctATTAATAATTTTAGAGAATAAACTGTTCtgcatgtaaaattataaaCCAAATTTTGTCAAGACTCAAGTCTAGTGCAACAACACTGGACTGTGGGAATCAAGCATCCTCTGTCTGAGGTTGTGTGGTGATGTGGTTATGCAGGTGTGTTGTGATGGTTCACACTTTACAAATCTTTCAGACGTGAAAAGAGACTTAAGATGTAGCATCGCCTGCTTTGCTCAAAACATCCTGTTCCAAAAGTTGCcccaagaaaaaaattaaatcagccGGCAGcatgtattttgtaaaacattctcacatgaattttattttaatatattatacactaTTCTGAAAGTAATGTGTTGTTATGGCAAAACCCACACTCAGCATTTAAATTACACTTACATAGGGCCTATATAACATGAGTCTAGATACATTACATTGTACAGTGCATTCCACTACAATGTATCCCCTTGACTTTTACCTTCCCCCTAGAGGGCACCAATGTCTTTCTGATTTTTCTACAGACCAGACACCTTGGTTTAATCACACACAGTCGTGACTAGCCATAAAATGTCAATAACTTCTTAATCTTTCCAAGTTAGAGAATGATTCTGCACTACAGCTGCTTGACTAACCAGATAGAACTAACCAAAACTAAGTGCTCTAGAATACAATTTTTCTCAGCTGctgttttcttcttgtttttgtaACAATATGAATGTCTTGTATTCCCCTCACACCCCTCCCCAAAATACTTCTTAAGAATGTTCTTTAAATCTCATAAGTTCCCATGACTTATTTTAAATCCCAGAAGGTaagatgttttataatttaagaATTACAACATCATAATATTTAGCATTACTAAGGATTGCACAAGTCCGATGTGACACCTACGATACTGTATGATAACTGCTTTCAATGTAAAGTGTAGGAGAGATAGTGTTGTAGCACCACCAGTTTAAACAATTAGAAATGAGCTACTGTGggacttacttttttttttacttgttttgtcctatagcatttttttgttttgttaatgggtgttaaataatgttacagAACTGAATCATCAGATTCTCTTGATCGattttatctttatataaatactttcaTGTCTGATATCTTATGTGTTTCTACTGGGCTTTCACAGTACACAACATTTGCCCGCAGAatgacttaaaaacaaaatgtcttgttagtctgttttatttctagtccgtaagttttttttcttattttatttagtaaataaaatttaagcTGCATATATATGTGCCTGTTTTAAGTAAAATGGCATTGCTAATGAATAAGTAGTATATTGGTAAATTCCATGCAGAAAAGTTTTGGGTTTACACtgcattattttgtaaaaacattgaCAAATCATTTAGGGGTGTATGTTGACATTGACTTAAATCATTTCAGGGTGTGCAGTATTCTAATAAACTAGTAAAGAAGTATTTTCACACATATGTGGAATTAATGTCATAATGTTTAGAGACACAAAACCACAGCCCTTAAAACATTCCTTGTTGTacattttgac

Function

GO: NA

KEGG:

id description
ko04142 Lysosome
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54475 lncRNA downstream 40175 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 43074 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 43359 15561722 ~ 15562078 (-) True G36967
TU54241 lncRNA downstream 436079 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 699816 14905385 ~ 14905621 (-) True G36714
TU54502 lncRNA upstream 92658 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 102581 15713675 ~ 15713975 (-) True G36986
TU54670 lncRNA upstream 118109 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 131646 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 132620 15743714 ~ 15755392 (-) False fam222ba
XM_043240049.1 mRNA downstream 1105 15589884 ~ 15604332 (-) True si:dkey-65b12.6
XM_043239934.1 mRNA downstream 26470 15568019 ~ 15578967 (-) False alkbh2
XM_043239936.1 mRNA downstream 26470 15568019 ~ 15578967 (-) False alkbh2
XM_043239935.1 mRNA downstream 26470 15568019 ~ 15578967 (-) True alkbh2
XM_043238804.1 mRNA downstream 51350 15534694 ~ 15554087 (-) True atxn2
XM_043240407.1 mRNA upstream 3373 15614467 ~ 15616462 (-) False LOC122345891
XM_043240406.1 mRNA upstream 3373 15614467 ~ 15616462 (-) True LOC122345891
XM_043240392.1 mRNA upstream 5507 15616601 ~ 15684436 (-) False ncor1
XM_043240405.1 mRNA upstream 5507 15616601 ~ 15684436 (-) False ncor1
XM_043240399.1 mRNA upstream 5507 15616601 ~ 15684436 (-) False ncor1
TU54482 other downstream 30620 15573111 ~ 15574817 (-) False alkbh2
TU54484 other downstream 30620 15573258 ~ 15574817 (-) False alkbh2
XR_006251075.1 other downstream 238024 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 296997 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 340492 15205951 ~ 15264945 (-) False pdzd2
TU54499 other upstream 92658 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 113933 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 115688 15726782 ~ 15727910 (-) False emc6
TU54665 other upstream 115761 15726855 ~ 15727910 (-) False emc6
TU54668 other upstream 115761 15726855 ~ 15728108 (-) False emc6

Expression Profile