RNA id: XM_043238724.1


Basic Information

Item Value
RNA id XM_043238724.1
length 3508
RNA type mRNA
GC content 0.48
exon number 7
gene id trabd2a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30122226 ~ 30164017 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aGCTCGCTCAGGACTTGTTGCGCTGCAGTGAGAGTCTGAAGCCGCGGAGGAACAGAAGAGACTCGTTTGGAGAGTTGGAGGAGAAACTCAAAGATCTGATCCGCTAAAGATCTCCTCGGCGCTTCGAGTGTGTGTTCGTGCGATCAGGATGTGTGTGAAGTGAGCTTCGGGACAGACCGCATCTGCTCGAGTGGAGCTGGAGCTTCTCTGACGAGCATCATGTCGTAGAAGTTGCTCCTCGAGCTCTTCTggctcagtccagctctcgtcCAGGATGGCTCACTTCACTTTCGTGGCATGTTCTGATCGTCGGTGAAGAAGAGTCGAGTTCGCTGGAGATTCTGCAGAAGACTGAGaggatggtggtggtggtggttaGTTGGGGCGCTTTTCTCCAAACCTGCTTGATATTGATGGTGAGAGCAAACCAGCACAACCCCAGAGAGACCAGCTGCGACCTTCACGCCAAACAAAGCGAGCTCAACTCTTTCCTGTGGACTATAAAGCGAGACCCGCCCTCGTACTTCTACGGCACCATTCACGTCCCGTACACGCGCGTCTGGGACTTCATCCCCGAGAACTCCAAGCAGGCCTTCCAGGAGAGCAGCATCGTGTACTTCGAGCTGGACCTGACCGACCCGTACACCATCTCGGCTCTGAGCAGCTGCCAGCTCCTGCCGCAGGGAGAGAAGCTGCAGGACCTGCTGCCCAAAGACATCTACCGCCGGCTCAAGACGCACCTGGACTACGTCAAGCTCATGCTGCCCTCCTGGATGACCCCTGACCAGCGGGGCAAGGGCCTGTATGCAGACTACCTGTTCAACGCCATCGCCGGGAACTGGGAGCGCAAGCGGCCCGTCTGGGTGATGCTGATGGTCAACTCTCTGACCGAGGCCGACATCAAGACACGCGGCGTTCCCGTGCTGGACCTGTATCTGGCTCAGGAGGCccagaggatgaggaagaggaccGGAGCCGTGGAGAAGGTGGAGGAGCAGTGCCATCCTCTGAACGGACTCAACTTCTCTCAGGTGATCTTCGCTCTGAATCAGACGCTCCTGCAGCAGGAGAGTCTCCGAGCCGGGGCCCTGCCGGTCCCCTACACCACAGAGCACCTGATCAAGCACTACAACTGTGGAGACCTGAACTCCATCATCTTCAACCACGACACCTCACAGGTGCCGAGCTTCCAGAACGTGACGCTTCCTCCGAACGAGCAGGTGACGGCGCAGGAGATCGAGAGCTACTTCCGGCAGGAGCTGATCTACAAGAGGAACGAGCGCATGGGCCGCCGCGTGCGAGCGCTGCTGGACGAACACCCCGGAAAAACGTTCTTCTTCGCCTTCGGAGCAGgtcaCTTTCTGGGAAACAACACTGTGATTGATGTCCTGAGACGTGAAGGTTATGAGGTGGAGCACACACCTGCTGGACAGATGCtacacagAAGGTCAGGAGAGCTGCCGGACGCGGACGCCCCGCTGGAGCCGTTCCTCCACGAGCGCCCAGATCTTCAGGAGGACGAGGAGCATCTGCTGGAGCTCCTGGAGAAGGTGGAGCACAAGCTGAAGAAGAAGCGGCGAAACAAGCAGAAGAAGCAGCGCCATCGGCAGTTCAACGAGCTCTGGGTGCGGATGGAGGAGAGCGTGACGGCCGAGGCTCCGCCTCCTGTCGTCCGCATCATCAACGGTTACATCACGGTACAGGCCCACCCACAGGAGCACGACCGAGCCAATCAGCACAGGACGTTCTCAGGCTCCGCCTCCTGGAGCCCCGCCCTCCCTGCTCTGTGTGTCCAgatcctgctgctgctgctgctttcgTGACCGGACTTCAGCTCTTCCAGAAACACTTCCTTGTAAATATCAGATGTATTATAGATGTAATTTAGAGTTTTGAATAAAGCATTTGTTTGTTcacttattatataaatatataaataagagtcattatatttttgtgacTAAATCAGCTACTAACCAGCTTAACCGGCCTCAGTCAAGAAAAAACCATCAGGTCAGGAAAACAGATGTACGGTGATTCTTCCTCTTCGGTCAACCTCGTGCTTTTGATGAATGTctaaaatgttgtgtttgtgacATAGAAACGagtcatttaatttattgaataGATAGTGTTAGTTGATCTAAATGTGTTTATGGCAGAATGAGGCAATGTAAATCATATCTGGTGTTTGTGatgttaaaagaaataaagtatttatatagttCAGTGTTCTCCAAACGAAAGATGAATGCAGACTCTCGTTCTTCTCTCGACGCTGGAACAGAAGCAGTGTTTTATGAAGGATCTTCATCTTCTTGACATGGCTCTTCTGTccttcatcctcttcctcctcctcttcctctcagcTGAGATCTTCACCCAACCACCAAGAGGTCTTTTATTATgctctttaaattaaatcacaagaccaatttatgcttttgaatggaATGGTTTCTTTCTGGTTGCCAGCGAATGTGTGAAAGGATTTTCTTTGTAAATCATTcttcattaacaaaaaatgttgtgGTTATTACCACGGTTTATTGATGAGAGCTGATCCGAGATCAGACAAATACAAACCCAACTCCAGAGTGTTGTTTTGATGTGGCTGTAGTTAACCTTAGTTTAGATTGCTGTATGATTCTGGCCAGTTTTGAGGAAAGTTTCTTCGGTTGTTAACAAGCTTTGTTCAGTACTGAAGTCACCTCTTCAGAAGTCTTCATGGATCAAACTGGGAATCGTTTTCAGACGAAATGCATGCCATgaacacatttttctaaatcCACAAACACTTTATCATTCATACTCTACAACCTGAAAAAGCGCATTCAGATCAGAAGGATGCTAAACTGTCCATTTCTGCAGGAATTATATTCAAATTTCTGTTGAATATTTATAGGGAAATCGAGTAATAATTAATCCAAACACAACTAAATGCTAACACAAGATACTTACACAACTACCTCACTTTGCcataagttaaatatattaggtttctaatataaataaacatattgtaGGAACTTAAAGCTCTTTGCAATGACTTTTATCATAAAGATAAGAGAAACTCGTTCCGTCTCATCAGGTCATGACATAACatagttattatataatatctcAATATGATGTCACTGCTGACATCATACGAGCCTTTCAGTGTGTTATCAGGGCTCTGAAGATCTCACGATGAAATGAAGACATCATGTTCTTTTTTACGTAAATGTCTAGAAAGCAGAAAAtgtcaaacctgttcattagaagggATGTGTCCGATCTAGTACTTTGTATCTGATCTTTTAAGATGTGGTTCTTCACACAGATTATTCACAAGCGGCTTCAACAcagaaatcataaataatatcaGAGTTCTTTCTGAAGAAGGTGGTTACGGTCAGAAATTCAGCAGGAGTGGGAATAAGAAAACTGAAGGGCTGTTTAACACACATTAGAGAAAGTGGAAATATTAGCGTGAACTGCATGAACATCGAGACTGAATGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59792 lncRNA downstream 4363 30116408 ~ 30117863 (-) True G40418
TU59797 lncRNA downstream 15488 30105842 ~ 30106738 (-) True G40422
TU59777 lncRNA downstream 67429 30053612 ~ 30054797 (-) True LOC122345788
XR_006251033.1 lncRNA downstream 67429 30053629 ~ 30054797 (-) False LOC122345788
XR_006250938.1 lncRNA downstream 76078 30039454 ~ 30046148 (-) True LOC122344857
TU60163 lncRNA upstream 133377 30297394 ~ 30419407 (-) True G40654
TU60187 lncRNA upstream 318004 30482021 ~ 30482226 (-) True G40676
TU60188 lncRNA upstream 319999 30484016 ~ 30484242 (-) True G40677
TU60182 lncRNA upstream 326497 30490514 ~ 30490878 (-) True G40671
TU60191 lncRNA upstream 340779 30504796 ~ 30512970 (-) True G40680
XM_043238950.1 mRNA downstream 28650 30087966 ~ 30093576 (-) True rnf170
XM_043238645.1 mRNA downstream 88014 30027830 ~ 30034212 (-) True june
XM_043238648.1 mRNA downstream 110217 30006999 ~ 30012009 (-) True thap1
XM_043238649.1 mRNA downstream 116257 29997436 ~ 30005969 (-) True LOC122344968
XM_043238643.1 mRNA downstream 151317 29967407 ~ 29970909 (-) False LOC122344964
XM_043240155.1 mRNA upstream 327014 30491031 ~ 30511279 (-) True mbd2
XM_043240156.1 mRNA upstream 327316 30491333 ~ 30511263 (-) False mbd2
XM_043238953.1 mRNA upstream 356589 30520606 ~ 30523419 (-) True LOC122345124
XM_043240129.1 mRNA upstream 371817 30535834 ~ 30537915 (-) True LOC122345715
XM_043238655.1 mRNA upstream 376480 30540497 ~ 30542440 (-) False LOC122344973
TU59790 other downstream 28713 30091949 ~ 30093513 (-) False rnf170
TU59791 other downstream 28713 30091949 ~ 30093513 (-) False rnf170
TU59650 other downstream 195393 29926385 ~ 29926833 (-) False LOC122344966
XR_006251000.1 other downstream 467165 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 632022 29460585 ~ 29490204 (-) True G40182
TU60232 other upstream 436884 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 440827 30604844 ~ 30613141 (-) False fubp3
TU60256 other upstream 467011 30631028 ~ 30696688 (-) False G40711
TU60253 other upstream 486924 30650941 ~ 30696688 (-) False G40711
TU60266 other upstream 625616 30789633 ~ 30792719 (-) True G40713

Expression Profile