RNA id: XM_043238734.1


Basic Information

Item Value
RNA id XM_043238734.1
length 2459
RNA type mRNA
GC content 0.44
exon number 8
gene id ehd2a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21829709 ~ 21834433 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAAATCCCAGCTGGCTGTTAACAGGCAAATCTGAGCTGAGACGAAGTAGGCTACTCCCCTCTGTTGTACAGTTGTGTCTAGGGTGACCATTAAGAGCACATCTGTTCAGCTCTGTAGCGCTGTTAAAGTAAACTCTCTACTGAAGCTGAGCGACTCAATGGCTGGCAAAGAAATGAAGAACAGGGGTAGTAAATGTCTGAAGGAAGTTCATACGGTTACTGAAGCTCTGAAGACACTCTACCGGCAAAAAATGCTCCCGCTGGAGAAGTATTATGACTTCTCTGATTTCCACTCGTCAAGCCTTGAAGATGCAGATTTTGACAACAAGCCCATGATACTAGTGGTGGGTCAGTGCTCTACAGGAAAGACCACTTTCATCAGATATCTTCTTGAACAAGAGTATCCAGGAAGCCGAATAGGCCCAGAGCCCACAACTGACAGTTTCACTGCCATAATGCATGGAGAGATTGAGGGAATAATTCATGGCAATGCTTTAACTGTTGACCCCAACAAGCCTTTCCGCAAACTCGGTCCTTTTGGAACAACCTTCCTCAATCGATTCCAGTGTGTGCATGTGCCCAACCGAGTCCTGGAGAGTATCAGTATCATTGACACGCCAGGGATCCTGTCTGTGGCCAAACGCAAAATGAGCAGAGGCTATGACTTTCCAGAGGTCATCCGCTGGTTTGCGGAACATGTTGACCGCATCATCCTCTTGTGTGATGCACACAAACTAGAGATCTCTGATGAGTTTTCGCACACTATAATGGCATTGCGGGGCAACGAGGACAAGCTCAGAGTGGTGCTCAACAAGGCTGACATGGTGGACTCCCAGGAGCTGATGCGAGTCTATGGCGCACTCATGTGGTCACTTGGGAAGGTGTTCTGCACACCAGAGGTTCTGAGGGTCTACATTGGCTCCTTTTGGTCCTCGCCAATGCGTATGACAGACAATCGAAAACTGTTTGAGCAAGAAGAGGAAGACCTTTTTGCAGACATTCAGAACCTTCCACGAAACTCTGCACTGAGAAAACTCAATGATCTGGTGAAGCGAGCACGACTTGTGAGGGCCCATGCTTATATCATTAgctgtttaaaagaagaaatgccTTTAGTTTTCTGtagagaaaagaagaagagagatcTAATCTATGACCTCCCCATCATCTATTCAAGAATCCAACAGAGATACCAGATTTCCCCTGGAGATTTTCCAGACTGTGCCAAGATGCAGGAGCGACTCATGAGCCATGCCTTTAAGTTTAAAGCCCTCAAGCCTAAGCTCTTAGAAGGGCTGGACGAGCTCCTAAACTCTGACATAGCCAAGCTAATGCCTCTTCTAcgccaagaagaagaagaagccgCTGGCCAACTTTTAGTGCAAGGAGGACCTTTTCTAGGTTCACAAAGGGGACCTTTTATTGTGGGGAACCCATTTAAACACTATAGATCCAATGGAGAAAGTGGTCATGTCTCAGATGAAGAATGGGTGGTATCAAAAGATAAATCAAAGTATGATGAGATTTTTTACAACCTCTCACCTCACGAGGGAAAGCTGAGTGGGTCTAAAGTGAAGGGCTGGATGATGAGCACTCATCTGCCCAGCTCAGTTCTGGGACGAATCTGGAAGTTGGCAGATGTGGACCGTGATGGCATGTTAGACGATGAAGAGTTTGCTTTGGCTGGCCATCTCATTGAGGTAAAGTTGGAGGGCTTTGGGCTCCCTCATGAGCTACCTGCGCAACTGGTGCCACCATCCAAAAGACAGCGCAAGAACTCTGAGGCTGGAGACAATAATAATTAGTCATGTTTATGATGACAGTGTTTATTGAACATTTAAGtcgttaacaataataaatgaatgtattcaCTCATATAACACCTAAAATCACGTGCTGCTTGCAAATGTATAAATCCTCCCTAGACGGAACAAATCTCAAAAGGCAAGTTGTTTTGATGGTTCAGATTGCCCAAGGGTTGAGAACAGCTTATTCTGTGAAACCCGCTCGGCTAGTTGCAGAAACGCCTTCGAGACTGTTGCTTGTCAACACTTAAAAGTGCCTTATTGAGAATGCTATTTGTGAagcaaagttttgtttgttacaaATGTTTGTCaagaatgaaatataaatgatagaGCAGCTGTTTCATTagctgtagaaaaaaaaaaatatttgtaagatTTTGACTTTGTAGAGGCTGCATATAATAATGGGGCtgtatgtaataatgtaataatgactAACCACTATCAAATGTACGACGGTCCTATTCAGGAGACCTATGAACTAATTTACAGCAGAATAAAATGTCTAAACAGACTGCCGGctgattgcaaaaaaaaattgagtaaCCTTACTGAAAATTCCCTTGTTTGGTAAACACTCCTAGCGGTGGTGTACCGAAAGTACATCAAGTCTCGCGAGAAGTGTGCTTTACTCTGCCCGAGGTGCAGAA

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56970 lncRNA downstream 2 21821476 ~ 21829707 (-) False G38510
XR_006250963.1 lncRNA upstream 1991 21836313 ~ 21840100 (-) True LOC122345027
XR_006250964.1 lncRNA upstream 1991 21836313 ~ 21837605 (-) False LOC122345027
TU56981 lncRNA upstream 5037 21839359 ~ 21839673 (-) True G38515
TU56990 lncRNA upstream 32806 21867128 ~ 21867461 (-) True G38521
TU56992 lncRNA upstream 33293 21867615 ~ 21876585 (-) True G38523
XM_043238742.1 mRNA downstream 27 21827606 ~ 21829682 (-) False selenow1
XM_043238741.1 mRNA downstream 27 21827606 ~ 21829682 (-) True selenow1
XM_043240340.1 mRNA downstream 3604 21809013 ~ 21826105 (-) False akap10
XM_043240339.1 mRNA downstream 3604 21809013 ~ 21826105 (-) True akap10
XM_043238169.1 mRNA downstream 21605 21704201 ~ 21808104 (-) True LOC122344645
XM_043238729.1 mRNA upstream 7989 21842311 ~ 21849084 (-) True si:dkeyp-117b8.4
XM_043238730.1 mRNA upstream 7989 21842311 ~ 21847882 (-) False si:dkeyp-117b8.4
XM_043238737.1 mRNA upstream 18246 21852568 ~ 21856541 (-) True rsph4a
XM_043238738.1 mRNA upstream 18257 21852579 ~ 21856543 (-) False rsph4a
XM_043240559.1 mRNA upstream 22661 21856983 ~ 21867039 (-) False sympk
XR_006251046.1 other downstream 3604 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 210126 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 460661 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 893616 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1702319 20125589 ~ 20127390 (-) True G38140
XR_006250934.1 other upstream 43834 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 43834 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 125463 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 205579 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1767922 23602244 ~ 23604733 (-) False LOC122345364

Expression Profile