RNA id: XM_043238738.1


Basic Information

Item Value
RNA id XM_043238738.1
length 1695
RNA type mRNA
GC content 0.52
exon number 7
gene id rsph4a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21852568 ~ 21856543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAATAAAAACGCTGCCAGGCAACAGGTTTGTTGTAGTTACACAGCAGAGTCCATAGCAACGGAAGTGAACTGCGGGAAATGCGCTGATGTGTGTGCTAAGCCGGTCTGATGATTTGCCGTAAGAATAAaggttgaaaaaaaatctacaaatttAATAATTCGCCGACGGTTTGTAAGTTTAACTAAAATGGAGATGACAGAGGAAGCGTTGAACAATGAGAGGCTGCAGGCTGCGGCGCGTTTTAAAGCTTTCCTGATGAAGAACAGCACCAAAACAAACCTCAACCTCTATGACCACCTCGTGGGACTCTTAACCAAAGTTATGGATGAGCGTCCAGAGAACGCAGTCGATGTGATAGAGGACATGAGTCGCGAGCTGAAAGGAAGTATCCTCCAGGAGAAGCAGGACACCTTGCGTGACAGTCCGTCGTCCTCCGCGGCTCTGTCACTGGCCGAGCAACAGAAAGCGCTCTTTACTCGCGCGGCCGGAGATGAGGGCGATCACGAGGAAGATTTGGTGGAGACTCCTTTACCGAATGTTGCAGAACTGGCGTTCTTCTTTGAGCAAGCTGGTGTGGGTCTGGGGAGAGAGGAGATGCAGAGAGTCTTTCTGGCTTTGAAGCAGCTGGTGGACTCACAGTGTCTCCTGCGCTGTCGATTCTGGGGCAAGATCCTCGGCACGCAGGGCAACTACCTGGTGGCTGAAGGGGAATtcagagaaggagaaggagacgAGGAGGAAGGGACAGAACAGACACATGAGGATGAggagagggaggaagagacaCAGGAGGACAAGGATGAAACAGAGCTCGTGGAAGCTGCTGATCCTCCCCCCAAATCGACGTACAAGCCACCTCCACCAGTGCCAAAGGAAGAAAATCACACCGGTGTCAACAAATACACTTATTTTGTGTGTCAAGAGGCCGGCATGCCGTGGGTCAGACTGCCGATAGTCACCCCTGCTCAGATTACAGTGGCTCGACAGATCCGCAAGTTCTTCACAGGCAGGCTCGATGCTCCTGTTGTAAGTTTTCCTCCCTTTCCTGGCAATGAGACCAACTACCTGCGTGCCCAGATCGCACGGATCTCAGCGGGCACACATGTCAGCCCTCTGGGATTCTACCAGTTTGGGGAGGATGAAGGTGAGGATGATGGACTGCGAGACAGCTATGAGGAGAATCCTAACTTTGAGGGCATCCATGTAAATGAGATGGCTGAGTCTCTGAATCTATGGGTCCATCATGTACAGCATATACTTACACAGGGCCGCTGTGTGTGGGTAAACGTGACTAAGAAGTCTGTGGATGATGTGGATGAAGATGCcgaggaggaagagagggaggaGGAACCTGATGAGCCGGAGCCGGAAGTTGGGCCTCCTCTCCTGACACCTCTGTCTGAGGATGCAATTTTCCATCGCTGTGCTGCGCTCCAACCTCTGGCCTGGAGCTTATGCTTATGCCAGTGGCAGGAAGTTTGGAAACATATACATTGGTTGGGGGATGAAATATATCGGAGAGGCATACACCCCAACAGTTCTTCCACCGCCCCAGAATGAGTACCCCAGTGGGCCTGAAATCACAGAGGCCCTAGACCCCAGTGTGGAAGAAGAACAGGCTTTAAAAGCTGCCCTGGAGGAGCAGACGGCAGCCCTGGATGAGACAGAGGATCTggaagatgaggaggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250963.1 lncRNA downstream 12479 21836313 ~ 21840100 (-) True LOC122345027
TU56981 lncRNA downstream 12906 21839359 ~ 21839673 (-) True G38515
XR_006250964.1 lncRNA downstream 14974 21836313 ~ 21837605 (-) False LOC122345027
TU56972 lncRNA downstream 22847 21827615 ~ 21829732 (-) False G38510
TU56968 lncRNA downstream 22872 21827323 ~ 21829707 (-) True G38510
TU56990 lncRNA upstream 10585 21867128 ~ 21867461 (-) True G38521
TU56992 lncRNA upstream 11072 21867615 ~ 21876585 (-) True G38523
TU57036 lncRNA upstream 152343 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 181817 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 181817 22038360 ~ 22041263 (-) True LOC122344815
XM_043238729.1 mRNA downstream 3495 21842311 ~ 21849084 (-) True si:dkeyp-117b8.4
XM_043238730.1 mRNA downstream 4697 21842311 ~ 21847882 (-) False si:dkeyp-117b8.4
XM_043238736.1 mRNA downstream 18146 21829709 ~ 21834433 (-) True ehd2a
XM_043238735.1 mRNA downstream 18153 21829709 ~ 21834426 (-) False ehd2a
XM_043238734.1 mRNA downstream 18257 21829709 ~ 21834322 (-) False ehd2a
XM_043240559.1 mRNA upstream 440 21856983 ~ 21867039 (-) False sympk
XM_043240555.1 mRNA upstream 440 21856983 ~ 21867039 (-) False sympk
XM_043240556.1 mRNA upstream 440 21856983 ~ 21867039 (-) True sympk
XM_043240558.1 mRNA upstream 440 21856983 ~ 21866847 (-) False sympk
XM_043238398.1 mRNA upstream 20538 21877081 ~ 21884022 (-) True LOC122344823
XR_006251046.1 other downstream 26474 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 232996 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 483531 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 916486 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1725189 20125589 ~ 20127390 (-) True G38140
XR_006250934.1 other upstream 21613 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 21613 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 103242 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 183358 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1745701 23602244 ~ 23604733 (-) False LOC122345364

Expression Profile