RNA id: XM_043238768.1


Basic Information

Item Value
RNA id XM_043238768.1
length 4736
RNA type mRNA
GC content 0.50
exon number 13
gene id ankle2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5398894 ~ 5410494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAAACCGAGCCGTAAACAATGCGACCCTTCCAGAGCGTCCGCGCGATTCACGCTCACATAAACGTTTAATAAATCACGCGCGCACATCTGCGCGTTCCCATCGCGCTCGGCGTCACCGTTCAGCCGATAGATGGTAGCCGCAACAGCAGAAGCATGGACGCGGTCCTGACCAGGTTGAAAGGTCTCACTGCTGACGAGCTGAGGGAGGAGATCATTAAAGCCAACTTGAAATGCGGCCCCATCACCGCCACGACAAGAGCCATATTTGAGCGTAAGCTCGCCAGGGCTCTTGTGGAGAACGCCGGACTCACCGAGCCCGACGGCGGCAGCGGCGGTGGTAACGGGACGTCACTGGACGGCTCTGGGAGTGTAGCGGCGCCCTGTGCCAAATCGGCGTCCCAGGATTCGGTCGCAGGCGAGGATGGGGATTTTGGGTATGGCATGGGCCTCAACCCACCTGAGGAGGAGGCTCTGAGTGGGACGGGGTGTTCTTGTAATGTGGAGAATTCACAGTCAGAGACGCAGACTCCCTCGAAAACCGCTCAGGTGTCGCCCACCTTCTTCTACGGAGTGTGTCCGCTGTGGGAGGATGTGCTGGCCAGGAACGAGAGAGCCCATGTGTACACGGATAAGAAAGAGGCTTTGCAAGCTGTTAAAATGATGAAGGGGGCTCGCTTTAAAGCTTTCGCCAATCGCGAGGATGCTGAGAAGTTTGCCAAAGGCATATGCGACTACTACCCTTCGCCTAGCAAAAGCACTCCCTGCGTTTCTCCTGGCAAACCTGGCTTGGTGTTTTGCAAAGACCACTCGTCTATGACGGAGGCAGACACAATCAACAGGGAGAAGGCCAACAGTTTTAAGAGTCCTCGGACGCAAGATTTGTCGGCCAAGCTGAGGAAGGCTGTGGAGAAGGGAGATGAGATGGCCTTCACCGAGCTGGTTTGGAGCAACCCTCGTTACCTCATCGGGTCAGGGGACAACCCTACTGTAGTCCAGGAGGGCTGCAGATATAATGTTATGCATGTGGCTGCAAAGGAGAACCAGCCAGGCATCGTTCAGATCCTGCTGGACACTCTGGAGAACCCAGATTTCATGCGGCTCATGTATCCAGATGACCAGGAGAGCATGCTGCAGAAACGCATCCGATATATCGTCGACCTGTACCTTAACACGCCAGATAAAGCTggatTTGAGACGCCACTCCACTTTGCTTGCAAGTTCGGCTGTCCAGAGGTGGTGAACATACTCTGTTCTCATCCGGATATCGACAAGAAATGCAAGAACAAGTACAGCCAGAAGCCCTGCGAGGTCACTTgcgaaagaatgaaagaaaagggTAAAATTCAGGAGGTCAAACAGAAGATAAATGAATATTTGGAAGATCGATTATACATCCCCTTATTGAGAGCTACTGATAACTCCTCCCAGCCTGTGATCGGTGCACCTTGGTCCCCTGAGCCAATGGAAAATCTGTCACCGCGGTTACCAAGAAGCCCGAAGGATCCAGTTATGGCGGTCAGGGCCTTTGCTGGACCTTTAAGTCCATCTAAAGCAGATGAGTTCAGACGAGCGTGGAAGACTCCTCCCAGAGAACGGGCAGACCGTTTCCACAACATCCTAAAGTCTGACCCAGACCGTGGAGCAGAAAGAGTTGGCAGGGATCTGGCCCACGAGCTCGGTCACCCCTGGGCGGAGTACTGGGATTTCCTGGACAGTTTTGTAGACCTGCAGTCCAGCGATGGCCTGAAAATGCTTGAAGAATACCTCAGTAAAAAGGACTTCAGGGAGCGAGCTCATGAGGAGGCCGGAGAGAACGAAACCAGCAACAAGTTTAAAACCCCATCTCCAGGAAAACTGAAGAAGTTCTGTAACTCCATTTCTGTGGGGGCATTTTTGGACGAGGGCGACGATATCAGCCTGGAGGAGATCAAAAACAGGCAGAACGCCGCCCTCACCAGCATTTCTTCGGTGTGCTCCAAAGACGGCCTGCAAGGGGCGGTAGGGGGGCTTGAGTTTCACATCCTCCCGGTTTCCCACAGCGCTGACCTCATCGAGGTGGCGGCGGAGCAGGATCTGCTGCTCTCCAGCAGTAAAAACGGCCTGTGCGAGCAGGGCCCTGGGGACAGGACTCCAAACGGGGACAAAATGTCCCCTCGCATTTGCAGTTCATCAAATTCCTGCATTCTGTCGCCGATCTCAAACCTCATGGCTGAGTTTGAGAGGATGTCTCTGCTGGACGAGCCAGATCGGACGAACAGGGAGAGAAGAAGAAGCGGAGGGAAACGTCACCGAGACCCCCCGGCCGCCGAGCTCACCTCCGGACTGGGCCGTCTCTCTTTATCCTCGGAAGACGACTTGGTGTTTGATAAAGACAGGACGTCTGCGTTAAGGGCAGTGGAGAATGATGGATCGGAGAGAAGAAACGAAATCGACGCGAGGTCCAGTGCAAGTTCGGATGAATACTTTCTGGCCAGCGAGAGGTTGGAACCTGCGAACCAACGGACTATAGAGACTCCAGGAGGCGAGCGTGCAATCTGCGCTAGGTCAAAGTCCTGGGATCACGGGGGAAGAGATCTCAGCTCCTCAGGGTCTTCCGGCTCCTACAGATCACTTGACGGTTCTCAGGACTTTATACTGCGCACTCCTCCCAGAGCGACGAAAAGACTCTTCATCGAAGGGGATTCGCCCACCAAGTTGGACCGAGAGGTTCTGTCAGCTTTAGGAGGCGCAGACATTGACTCTCTGAAGTATCCTGGCATTCACAAATGGAAGAGCACAATTCAGGCATACTCCCACTTAGAAATGCAAAGCTGGCAGACTCCTGCGGTGTACAAGAGCCATTTGAGGGCTCACGCAGCCACCCCCGGCTCTCCAGCGGGCGGCTTGATGTCCCCGGCGGGTCGCTTCAGCCCAGCCCGCCACATGAGCTCACCGGACGTCTGCAGCCCCGGGCGCTACAGCCCAGCACACTCCAACTACAGTCCCGTGAGCTACATCCAGCGCATCCGACTCAAACATTTCGGCGACGCTCCCATTTAACGAACGCTCTCCATCCCGTACGGCCCAACGATCAGCGTTTTGTAATGCCAAACGGCGCGGGATGAAACGTCACTGAGGAGAACGGCGTCACAGCGGAAAGCCGCAAAATGCTCAAATTGGACTCCCAGTGCCGTGCAAACCACCGCAGATAGGATCTCGCAACCGGCCGTCCTTCAGTTTCTATGCTCCTAGGTTCGTAGAACTCAAGCTCAAACGATATGCACATCTCCCGAAGGGTTCCCGAATCATGATCTATAATATTCGgtacttctgtgtgtgtgacaccCGGTGTGCTCTGTGATTGGTCGTATAGACTTTTTCTatcctgttttgttttctttcttatcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgagagATGTATCTGTAAACTTTCCCACTTATCAGTAATTTAAATTGGGGgatgaaaaaaatgtcaacGTATAAACCCagagctaaattaaaataacatagtagtaaattatttaattatttttgctaGTTAAGTAGcacaaaatgctcattttaatgggtatttaatggtttttaaggttaaaaaaaaagaaaaatatcagcTGACTGCCAGGAGTTATTTTTATTCCTTAATTGGAGAACTGCCTTAAATTTCTAAAAGAAAAGACCAACTTCTGAAACTCAAAAGCAGGCGTTGATACTTGCTAATAGCAGCCTTAGGAGGGGAGGTCTATAACGTGCGaatatttccctttttttaagtttaataaatgtgatttatcaTTTCTAAGTATGCATTTGTTTGCACTTTTAATTCTCGATGGAGTTTGACAGAGTTGTGAGATGTGAACCTGCGCCGCTTGAGCTAACGGATACGGATGGCGAGTCGCATTTAACGTCATGAAGACTTAAAGATTGTGGATCCGGAGTGTTGTAAGTGCACTTTAAATGTGTTCGAAAAAAAATCGTTGTTCCTCATCCCCATCGCAACCGGCCGATATTTTAGCCTCGCCTCTAGATCACGTCAAAGCCGTTCTCTCGCTGGCTTTTGAAAGGAAACGAGCccattggttttttttttggggaaGCGCAGCTACAAGACCACAAGCAGAAAAGCTCCAGGTAGCCGAGTTCCTACGTGATGAATTTCTCAAGGAATCGGGGTCCAGAGCATCCTCTGAGGTGCTTTCAGATCGCGTGATCTATTTCTTCGGTGCCCATCGTTCTCAGTGTAGTGCTGGCCTGTTGATCTTTGCTTCGTAAAGCTTTAGTGCCTTTGATTATGATCTGTTCGGAAGGGCCCGCGGCTCCTCGGTGCACTGACCACATACAAGCTGaatagaccttttttttttttctgtacccAAGGATCAAACAGTACAGTAGCATTGGCATATGCAGTGTCTGAATACCTCTTAAATACGATTGtaagagaagggaaaaaaaaaaaaggtttacagtTTAGTTCTCGCTAGTGTTGTATCAATGCCAGCCttactttttgttaaatgaagcTTTGTAGTGCCAACACTGGTGAATTGAAAAATGAGTTGCAGTTTGTTGTTGagaattgaattatttttgttgtcctGGCCTTTACGTTGCATGCATTTCTAGTcctattttattacattatacattaaaaaaaaaaagagaatttgaTGTTCTATTGACGAACGATAAATAAAGTGCACAGTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251035.1 lncRNA downstream 229645 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 229645 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 229645 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 322860 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 344991 5034111 ~ 5053903 (-) True G33333
XR_006250957.1 lncRNA upstream 165050 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 173029 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 178931 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 178931 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 179813 5588927 ~ 5595020 (-) False LOC122344983
XM_043238772.1 mRNA downstream 5265 5388819 ~ 5393629 (-) False poli
XM_043238771.1 mRNA downstream 5265 5388819 ~ 5393629 (-) True poli
XM_043240187.1 mRNA downstream 10569 5383555 ~ 5388325 (-) True LOC122345752
XM_043240048.1 mRNA downstream 18625 5351446 ~ 5380269 (-) True aacs
XM_043240589.1 mRNA downstream 65390 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043239633.1 mRNA upstream 3555 5412669 ~ 5429468 (-) False golga3
XM_043239632.1 mRNA upstream 3555 5412669 ~ 5429468 (-) True golga3
XM_043238965.1 mRNA upstream 21452 5430566 ~ 5435131 (-) True ranbp1
XM_043238962.1 mRNA upstream 26863 5435977 ~ 5454756 (-) False LOC122345133
XM_043238964.1 mRNA upstream 26863 5435977 ~ 5454756 (-) False LOC122345133
TU48850 other downstream 775836 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1205813 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 1205813 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 1205813 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1504419 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 22150 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 547185 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1415057 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1514316 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1521758 6930872 ~ 6943203 (-) False usp20

Expression Profile