RNA id: XM_043238772.1


Basic Information

Item Value
RNA id XM_043238772.1
length 2596
RNA type mRNA
GC content 0.48
exon number 10
gene id poli
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5388819 ~ 5393629 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttattcaattgcgTTTTTATTCGCATTGACTACGAATATTTAACCGTATTTGAAACTGATTTCAAATCCGTCCTTAAATAACAATTGTGTTTTATGCAATTAATTCTAAACGTTTCCATATTTacctcatatttattttatgattactATTTATTGTTTCGTTTTGCTCCAGACCTATAGATGGCAGTAAAGTGTCACGAGCGGCGGACTTATGTTTTGATTACGGTGGCGGCACGTTTTGCTGTTGATAATCAaaagtagtattttattttgcttggaCGTGTCATATCCACGCATCTGTTTCTTGTATCAAAGATGGACACGGACGAAGAGGGAGACAATGACTGGCATCGCAGTTTAGAGTCAGACATGCTGGACACAGGATGCTCCACTGAAAGGCTTGCATCCGTGTCCCAGAGAGTGATCCTGCACTTTGACCTGGACTGCTTCTATGCACAAGTCGAGATGATCCGAAACCCAGCACTCCGGGCCAAACCTCTTGGAATACAGCAGAAGTACATTATTGTGACGTGCAATTATGTGGCAAGAGAGCATGGCGTAAATAAACTGATGTCAGTGACTGATGCGGTGGAGAAGTGCCCTCAGCTGGTGCTAGTGAAAGGAGAAGATCTCACGCATTACAGAGAGATGTCCTACAAAGTCACGGAATTGCTGATGTCCCACTGTCCTCTAGTGGAGAGGCTGGGCTTTGACGAAAACTTCATGGACGTTACAGAAATGGTGGAGAGAAGACTTAAGCAAACCAGCATTTCAGATCTCTCCTTCATTGGacacatatacaaacatgaACCTCTGGCGGTCGATGAGGAGAACGCCCGGCTTGCTGTAGGATCCGTGATAGCATCTGAGATGAGGCAGGCCATCTTCAGGACGCTGGGACTGACCGGCTGTGCTGGCGTCGCTGACAACAAGCTCCTAGCCAAACTGGCGTCTGGAACGTTTAAGCCAAACCAGCAGACCACCCTCCTGCCGCGCAGCACCGCCGAGCTCATGAGCAGCCTCGCGGGACTCATCAAAGTGCCTGGGATCGGTTACAAGACGCGGGAGAAGCTAAAGGCTCTGGGTCTGGTCGGTGTGAGAGATCTACAGTTATGTCCTCTGCCTGACCTGGCGAAGGAGTTCGGCGAAGTGGCTGCTAAAAGGATTCAAAACCTGGCCTGGGGCATCGATGACTCTCCAGTCACGCCGGCCGGTCCTCCTCAGTCTCTCAGCGATGAGGACTCATTCAAGAAGATTTCCACTCTAgaggaagttcaaaagaaaaccGAAGAACTGCTTACCAACCTAACTGAGAGGATGCGCAAAGATGGCAGGCAGCCGCATACGTTCAGACTGACGATTCGCCGATATACCGTCACCAACCGCTGGTTCAACCGAGAGAGCCGGCAGTGTCCTATACCCAGCCACACCGGGCTCAAGATCGCATGCGGAAGCAGTGAGGCTGTGCCCCAGTTACTGTCTCTGTCGGAGAAGCTCTTCCATAAAATGGTGGACACGCGCGAGCCGTTCCATCTGACCCTGCTGAACGTGTGTTTTAGTAACCTGCAGGCTAAAAGCTCCAGCAGAGGCTCCATCGCCTCTTTCTTTCAGAAATCTCCTACAACGCAAACGACATGTCAGCGGCAGGTGGATCCTGATGACTTTGAGCCTGCTGCAAATTCCCAGGTCACTCGAGCGGATGTTTTACGTAAAGGtgataaaacatggaaacacacgTCAACCCAAGAATTACAAACACAGCCACCTTTAATCAACGCCACATCTCCCAGGAAGCCTGTTTCGGAGCCCTCACAAGTCACGAGCATCATCATAAGAGAGCCTGAGAAAACGGTGTGCTTCAAACCGCCCCGAGGCGTCGATCCAGAAGTATTCAAACTGCTCCCTGAACGCATTCAGATGGAGGTGATTTCCAGTTATCAGCATGAAGACTCCGCGCGGCTCAATTACGGAGCCGCTGACACGTCTTCGGCCGACGGCGACCCAGCAGGCCGTTCCACGCTGGCTTTTAAACAGCCGGCACCGAAGACTTCGTCATCCGCTCAGTCCGAGGAATCTGAGGAAAAAGTTCAAGAAAGTCAAATCCTACCGGCCGCTCAGGCACCTCGGTACGATGTCCCTGCAAACGTGGACGCTTATGTGTTCTCGCAGCTTCCTTCTGACGTGCAAAGAGAGTTACTGACTGAGTGGAGACAACAGAAGCCGGTCCTAAAAATCCCAACCAAACACTCGCATAAAACCTCCAATACCAAAGACAGGAAGAGTGCGGCTAAAGGCAGCCGGTGTAACATACTGAAATACTTCAAACCCAACTGAGGGTGGAAACGGTGcctgtttataaaaaaacagatgaaaaatgtaaaccatATCACTGTAAATCAGCCTTTCAGTAGTTCACAGAAAAATGTTGATTCTGCCATTCACTCACCTTAATGTCAAACCTgtgtatgacttactttcttgcATTAATCACAAAAAGGGAtgaaacaaactattttattcaATTCGGGTGAGTACATCACCACCAAATTTTAAGATATgtgttattttgttaataaaccatatatgttattaaa

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251035.1 lncRNA downstream 219570 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 219570 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 219570 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 312785 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 334916 5034111 ~ 5053903 (-) True G33333
XR_006250957.1 lncRNA upstream 180535 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 188514 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 194416 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 194416 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 195298 5588927 ~ 5595020 (-) False LOC122344983
XM_043240187.1 mRNA downstream 494 5383555 ~ 5388325 (-) True LOC122345752
XM_043240048.1 mRNA downstream 8550 5351446 ~ 5380269 (-) True aacs
XM_043240589.1 mRNA downstream 55315 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043240689.1 mRNA downstream 374878 5008086 ~ 5013941 (-) True rnf215
XM_043240688.1 mRNA downstream 387763 4949084 ~ 5001056 (-) True zdhhc8b
XM_043238769.1 mRNA upstream 5265 5398894 ~ 5410494 (-) True ankle2
XM_043238768.1 mRNA upstream 5265 5398894 ~ 5409114 (-) False ankle2
XM_043239633.1 mRNA upstream 19040 5412669 ~ 5429468 (-) False golga3
XM_043239632.1 mRNA upstream 19040 5412669 ~ 5429468 (-) True golga3
XM_043238965.1 mRNA upstream 36937 5430566 ~ 5435131 (-) True ranbp1
TU48850 other downstream 765761 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1195738 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 1195738 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 1195738 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1494344 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 37635 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 562670 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1430542 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1529801 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1537243 6930872 ~ 6943203 (-) False usp20

Expression Profile