RNA id: XM_043238778.1


Basic Information

Item Value
RNA id XM_043238778.1
length 4124
RNA type mRNA
GC content 0.46
exon number 19
gene id hmgcra
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18869042 ~ 18877023 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGAATGCCGGTTTTGGCGACCGGAGTCCTCAAACGTCAGGATATGGATTAATGTCGTCTGTAGTTATTTAATTCGGCCGCTCCAATCATGAAAAACGCACCTAAATGCTAATTTATAACAGCGAAAACATCTATAGGTTATAGGTAAATCAGCCGCATATGTGGAGGATTTTACAGTGATTTGCTGTTGGTGTACTAATTCTTTAACCCTCGTTGACCCTTACTGTAAGTGACTGTAACACACCTTCAAAATGCTGACGAGACTTTTCCGAATCCACGGCCTGTTTGTGGCCTCCCATCCTTGGGAAGTCATTGTGGCTACTGTCACTCTCACCATCTGCATGATGTCCATGAATATGTTCACTGGAAATAACCAAATTTGTGGCTGGAACTTTGATTGCCCCAAATTGGAAGAGCAAATCTTAAGCAGCGACATCATTATCCTGACAATCACAAGATGCATAGCAATAGTCTACATTTACTTTCAATTCCAAAATCTTCGACAGTTAGGATCCAAATACATATTGGgCATAGCAGGACTGTTCACAATATTCTCCAGTTTTGTGTTTAGCACAGTCGTAATTCACTTCCTGGACAAGGAGCTTACAGGCCTCAATGAGGCTTTACCGTTCTTTCTGCTGTTGATTGATCTCTCCAAAGCATGCGCTCTGGCTAAGTTTGCCTTGAGTTCAAACTCACAGGATGAGGTGAGGGAAAATATTGCCAAAGGAATGGCCGTTTTAGGACCCACTTTTACTCTTGATGCCCTTGTGGAGTGCCTGGTGATCGGTGTGGGAACAATGTCAGgTGTGCGACAGCTCGAGATCATGTGCTGCTTCGGTTGCATGTCTGTATTGGCTAACTACTTTGTGTTCATGACCTTCTTCCCGGCCTGTGTCTCTCTTGTGCTGGAGTTGTCCAGAGAGAGCAGGGAGGGACGGCCCATCTGGCAGCTGAGTCACTTTGCTAGAGTtctggaggaggaagaggacaaCAAGCCTAACCCTGTCACACAAAGAGTCAAAATGATCATGTCTCTTGGCCTGGTCATGGTTCACGCTCATAGCCGGTGGATTGCAGATCCCACATCAAGTAATGGAACTCTTGATCTTCCTCAAGTTGGAGTGAGCCTGAATGAAAATATGCCCAAAAGAATTGAGCCAGACATGCCCCTTTGGCACTTTTACCTGTCCAGgaTGATCAGCATGGACATTGAGCAGGTGATCACACTGGGTCTTGCTCTGTTCCTGGCTGTGAAGTACATTTTCTTCGAGCAGGTGGAGATGGAGTCTACCCTGTCCCTGAAAGTCCCCACTCCTAGCTCCATGCTCTCTCAGAAATGGTCTCCTGATCAGTGCTGCAGGAAAGAGGTTCCCGTTTCCAGCAAGCCGGAGAAAACTCCCCCTTCCCCTCCAGTTGTTACCAAAGAAGAAAGAGGTTTGCTCTTCTTACCTTTACTCATTTGTGTTAGCTTTTTGTCAGTGGAATCTAACTTCAGTGTCTTTCTTTCAGATTTAGTCATTCGTCCCCTGCCTGCCCCTGAGCCTGAGCATAAAAGTACTTTTGTTTTGGGAGAGGATGAAACTCAGGAAATTGTCGATGCGTCGGAGAGCGTGATCAGTGTTCCTGCTGAACCCAGACCTGTGGAAGACTGTCTGTCCATTCTGAAAAACCCAGATATGGGCGCGCGCTACCTCAGCGATGAAGAGGTGATCGTGTTGGTGAACTCAAAGCACATCCCAGCTTACAAATTGGAGGCCATGATGGAAACCCCTGAACGGGGGGTGATGATCCGTAGAAAAATGCTCAGCCCCAAATTCCCAGAGCCCACAGCTCTCACCTGTCTGCCTTATAAAGACTATGACTACTCTAAGGTGATGGGAACATGTTGTGAGAACGTCATCGGTTACATGCCAGTTCCTGTGGGGGTTGCTGGCCCTCTGTTATTGGACGGAAAGCAGTTTCAGGTCCCCATGGCAACAACTGAGGGCTGCCTGGTTGCCAGCACAAATAGAGGCTGCAGAGCTATTGCATTGGCAGGAGGTGCCAATAGCCGTGTTCTTGCAGATGGAATGACCAGAGGGCCGGTGGTACGTCTGCCCTCTGCCTGTCAGGCAGCTGAAGTCAAGGCCTGGCTGGAAAGCGATGAAGGCTTCGGGAGCATCAAAGAGGCCTTTGACCAGACCAGCAGGTTCGCACGATTGGAGaagcttctgattggcctggCGAGTCGCAATCTATACATTCGGTTCCAGTCCAGGACTGGAGACGCAATGGGGATGAACATGATCTCAAAAGGAACAGAACAGGCTCTTGCCAGGCTGAAGGAGGAGTTTCCAGAGCTTCAGATTTTGGCTGTTAGTGGAAACTACTGCACTGACAAAAAACCTGCCGCCATCAACTGGATCGAGGGCAGGGGCAAGTCAGTGGTGTGTGAGACCACCGTCCCAGCCAAAGTCGTCAAAGAGattttaaAGACGTCTACTGAGGCTCTGGTAGATGTCAACATCAGCAAGAACTTGGTTGGGTCTGCTATGGCTGGAAGCATCGGAGGTTACAACGCTCACGCCGCCAACATCGTAGCTGCTATCTATATCGCTTGTGGACAGGACCCAGCACAGACGGTGGGCAGCTCTAATTGTATCACTATTATGGAAGCCTCAGGCCCCACCGGGGAGGATCTTTATATCAGCTGTACTATGCCCTCCATTGAGCTGGGCACTGTGGGCGGAGGCACTAACCTTCCTCCTCAGCAAGCTTGTTTACAGATGTTAGGCGTGCTGGGCGCCAGTCAGGAGTGCCCGGGTGAAAATGCCCGACAGCTTGCCAAGGTGGTGTGTGGTACCGTACTTGCCGGAGAGCTGTCACTCATGTCTGCACTCGCTGCAGGACACCTGGTCAAAAGTCACATGACTCACAACAGaTCAAAAGTGAATTTGCAAGAAGCTCCAGGAACATGCACTAAGCAGGCATCTTGAGACGTCGCCTGCTGAAGATGCAAAAGGCACATAAAGAAGGAGGATCTCAAGTTTAAAGGCAAATGTGATTAGTAATTTAGATTATGTTAAAGACCAGCAAAAGGAATACAGACGTAAGACTGGTCCCCTGATCTGTTAAAAGGAGTTGTCTTGTAACTACAGGCATTCTTTCAAAGAAATCCGGTTGCAATCAAAGACTGGAATCAGGACCTGCTGCGTTCACACAAGCCTAGAGCCAGTATTTCTAAATCATATCTGAGCAGAAATAGCTGCTTCTGGACCTGCTTTGTTAAGCTTAACTTGCTATGGAGAGCAAAGCAAATCTCAAGTTTCACTGCGGCCAGCGCATAGAGAAACAGAAAGCCACGTAATTTAACTTATTTCTTAAATTCAGTATAGTTCAGATCACATACATGACTGACTGGATGgggttttatttcattatctgTTGGGGATAGCAACAGGGATCATATCGTTGCCAACTTTTTGCCAACTGGAAACAGCAACATTAGACAGAAAGGGAAGGATAAAGTTTACTCTTCATTGCACTTATTAAGGGAAATGGCATAGAGCAGTACTGATACAAAGAGGAATATAAAGTACTATGATTCACTAGTTAATACACACGTAGAATATTACAGAACGACTCTGAAATTGCCAAATGCAGCCGTCAGCAGTGCTTGCTATGTTTTCCGTGTCAGAAtgtacattgatttttttttttttttttttgctatgacACAGGAAATGAATGACTTTTGTAATTAAAAGGGTTGTGCTGTGGCACGACGGATATACAAAAATTTCAAAAGGTGCTACGATCCACACAATGTTTCAGTTCTTTGTAAATTTAGCtatttctttgtgtttaaaCACCTCTAATAATGGGTTCATGTAACAACACTTAACTTAACGCCTTGCATGTTTCCGAAGGCTTGAAACGGCTTTTATTTATATGGTTCTGGTTTTTGTGTCATGGAAAAGAGTGGCTGTTTAGACATGTACGTTTCATGCTGAAGACATTGAAAGGAAGCTTTGTTCTTTGTCCCCCCCCCAAAGGCTCAATTCAAATTCtccaataaataataaactgcaaacgttttgtatatttttttataataaaaagaaaatgtagaatTCATTGA

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0015936 coenzyme A metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050661 NADP binding molecular_function
GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity molecular_function

KEGG:

id description
K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55526 lncRNA downstream 55271 18813564 ~ 18813771 (-) True G37637
TU55429 lncRNA downstream 477394 18373317 ~ 18391648 (-) True G37571
TU55428 lncRNA downstream 495792 18372208 ~ 18373250 (-) True G37570
TU55427 lncRNA downstream 498225 18370523 ~ 18370817 (-) True G37569
TU55419 lncRNA downstream 503575 18362413 ~ 18365467 (-) True G37565
TU55695 lncRNA upstream 191891 19068914 ~ 19075774 (-) False G37757
TU55692 lncRNA upstream 193479 19070502 ~ 19075774 (-) True G37757
TU55715 lncRNA upstream 246002 19123025 ~ 19123308 (-) True G37774
TU55717 lncRNA upstream 255790 19132813 ~ 19133144 (-) True G37776
TU55737 lncRNA upstream 298440 19175463 ~ 19177884 (-) False mtx3
XM_043240777.1 mRNA downstream 36529 18815078 ~ 18832513 (-) True ttc37
XM_043240782.1 mRNA downstream 63334 18678708 ~ 18805708 (-) False mctp1a
XM_043240124.1 mRNA upstream 44404 18921427 ~ 18932581 (-) True ccdc180
XM_043239796.1 mRNA upstream 55677 18932700 ~ 18937965 (-) False card9
XM_043239795.1 mRNA upstream 55677 18932700 ~ 18937965 (-) True card9
XM_043239798.1 mRNA upstream 55677 18932700 ~ 18937964 (-) False card9
XM_043239797.1 mRNA upstream 55677 18932700 ~ 18937964 (-) False card9
TU54999 other downstream 2155875 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 2155875 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2235921 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2490547 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 2612303 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 990363 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 990363 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 991791 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 1174636 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 1248566 20125589 ~ 20127390 (-) True G38140

Expression Profile