RNA id: XR_006250967.1


Basic Information

Item Value
RNA id XR_006250967.1
length 4253
RNA type transcript
GC content 0.41
exon number 14
gene id rnf214
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14040982 ~ 14056705 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agtaaaaaaaaaaacatgtagatGATGTCATGAAAGTTGCGACAGTTGTCTTTTcgttttttacaaaaatatcattgttcatttaatttattaagatcACATTCTGTATACACTGAGAATACTGTAATCATTTTACCATCGAGTCCAGCTCTTCGAATGCTTAGTATCCGGAGTCTTGTGTCGCTGAGTTTGCCTGTCAATGGAAAGTGAAAAACACACCGAGTGGAGTTCGGCTTTAGATGAAGACTTAGTTCAGAATTCAGTATCTGCGGTGATTCCGCCGGGTCCTATCCCATGGAGCCTGTCTGCCGGGCCCTGGTCCATTGAGAGCAGCGTCCCAACAGTATTAAATCAATACACTGAAGCACAGAATTACAGCAGTTTTATCCCCAGCAATGAAACACAGAGCCAAACCGTACAGACCGAGAACTGGACAGAGGAAAGATCTGCAAACACAAGTGAGGACTGGGAGTCAGACATGtcatCACGAATCAGCTCTCTTAAAGATGCCATGCATCATATTGTTTCAAAGACtgacaaaacattcaaattagAGGTGAAGTATATCAGTGCAGCGAAAGgACGCGGTCTATTTGCAAAGGGTTCCATTAGCAAAGGTGAATTTGTTGTTGAATATAGGGGAGATATAATAAATCACGCAGAGTTGGAGAGCAGAAGAAAACGTTACCACACTTCCAGTGCTGCATTTATGTTTGAGTTTAAGTGGAGAGGCAAAACATGGTGtatCGATGCTTCTAGAGAAGATGGATCGTTTGGACGGATAGTTAATGATGACCACAAACATCCAAACTGTAAGATGAAGAAGATTGATGTGAATGGAAGGATACacctttgtttgtttgctctgaATGACATTAAAGAAGGAGAAGAAATTACATACCAATATGGAGGAGAAGACTACCCTTGGAGAACACAAaaaacCAGCATCGCTGCTAATACCAAGGCAGAAAGTGACTCTAAACCTTCCCCCAAGTCAAAGATGAATAATGCTACTTGTCAAAATAACTCTCCTCAACAAATTGTCACACAGCTCCGAAATGAAAGTGAGATTTTTGTTCCAAGACTGAGACAGACTAATAGTATAATAatgAAAGACAAAGATCTTGATGATTCTGATGAACTCTTTGATTCTACACCAGAGAGTTCAGATTATTACATTACAGATACCACTTCCGAAAGTGACTTTGACACTGATGCTAATCTTATACCAAACCAGACAAAACTTCAGCTTCTTTATGATGAACTGGATGTGGATGATTCTGGCTCACTGAGCTCCCTTGACTGTGACACAGCAACACCAGAAAAAACGCACAGCCTTGCATCTGAAGCATCTGGATCAGAAGAACCATGTTCGAGTCAGAATGCAATGGATGGCGTAGTTGTTAGTGCTTACCAAAAAAAAGGTGTTAGTAGAGTGTACAACAAGAGACATTACTGCTTGTATTGCTGTAAGCCTTATGCTAAAATGGCAAGGCATCTAGAAGGTTCACATGCAAGTGAATCTGATGTGGCTAAAGCGCTAAGCTTTCCAAAGAGTTccaaggagagaaaaaaacagctagATTATATTCGCAACCGAGGAAATTATGCTCACAATGCTGCTGTTATGGAATCAGGAAAGGGGGAACTAGTGCCATATAAACGACCATCCAAAGAAGCACAGGGAAAAGATTTCATGCATTGTGCATACTGTCAAGGCCTTTTTGCGAGAAAGGTCCTGTGGCGACATATGCGCACTTGTATACTTCAACCTCAGTCTGTCCCCCTCAAACCAGGAAAAAAACGTGTTCAGtccatgtgtatatacacaggCCCTGTTCCTTCAAACATGACTAAACAACTGTGGGAAGTGATTAGTGTCATGAATCTTGACTCAATCacagatataataaaaaaagacaaagtaatTATTGCTATTGGTCAGCATTTGTTAAACACAGGTGGACTGTCAGCCAAGAATAAGCAGTGTGTGCGAGAGAAGATGCGGGAATTGGGAAGGTTGGTTCACAATGCTAGAAGAGTCAcctctttaaaaacaatggaaGACTGCGTAAATCCAAGGAAGTACATGGAGACTGTCAAAGCTGTCAAGTATACATGTGGGTATGAATCTGACAAGTTTATGATTCCATCACTTGCAAAGAAGCTTGGGAATTCTCTGCTTCAAGTAAGCAAACTGTTAAAAGCTCAAGGCTTAATGTCAAATGACGAACAGCGAGTGAAGATTGCCAGTGAGTTTCAAGACATCCATCAAGAAAAGTGGAATGAAATGATCTTAGACACGGCATTGAGGAATATCAGGGAAGCCAAGTGGAATGTGCCTGCTCTCATGCCCTTTACTGAAGATGTccaaaaaatgcacacacatctCAGTCAAGTGCAAGATGAGTGCTACAAATCACTATCTGAAGGTTCCTCTACTAAAGCCTGGATGGAGCTGGCAAAGGTTTGTCTAGCCCAGATAATTCTCTTCAACCGGCGGAGAGGAGGAGAGGTGGCAAGCATGccattgtctgtgttttttccaAGAGACACTTCTGATCCACAAGAGGGTGTGGACTGGGCGCTGTCCGAAGTAGAAAAAAACCTCTGCAGATGCTTCTCAAGGATTATCACCATGGGAAAGTGTGGTCAGCCAGTTCCGATTCTTCTGACTCCAAAAATGCTGTGTTCCTTAGAGCTCCTTGTGAAGCAGAGAGAACCTTGTGGGGTTCTAAAAGACAATGGTTACATGTTTGCAAGACCAGAAGCCATGACACATTTACGAGGGTCAGACTGCCTCCGTGGCTTTGCAAAGGCATGTGGTGCAAAGTGTCCCAAATCACTGACATCTACCAGACTGCGAAAGCATGCAGCTATCCTTTCAACAGTGCTGAACTTGACAGAAATGCAGATGGACCAGTTAGCAAACTTTCTTGGACATGTTATAAAAATTCATTGTGAATTGTTCCGAGTCCCTGAGAAGACCTTGCAACTCGCCAAGATCTGCAAAATTCTAATGGCTCTTGAACAAGGAAGATTAGCTGAGTTTCATGGCAAGAGCTTGGATGAAATTGTGATAGATCCTGATgAAAAAGTTCTGGAAAGTGATGAAGACAGGATAATACAAGAGGGATCATCTGCTGTTTATGAATCAGTAGCAATGGAGATGCGTCCTTCTGCTGAGAGGAAAGACATGCCACCACCACCCAAAAAACATAAACCATCATTACCATTACCACTTTCAGGAGCCAGTGCTGTGAGGTCTTCTTTTCAAGGTCAAACTACCCATAAGAAAAATCCCTGGCAGCAGACAGAGGTGCAGGCAGTGGAAAGACACATGATGCGATTCATCACATCATTTACTGTACCGGGAAAGACTGACTGTGAGAAGTGTTTAAAGGCTGAACCAGAAGCTCTAAGGAACCGGGACTGGAAGAATGTGAAATTCTTCATATATAACCGTATTACAGCTTATAAAAAGAGTTTGCAGTACAAATAATATGAAGATTATCAACTCCCTGGTATggcattgttttgtttacaatagCCCTTTCTTCCATTTGACTTTTGAGaccTTTAAAAACTTTAGAAAGAGTGGGCCCCACAGTTGATGATCATAAAGTTTGTCTTCATAAAATggaaacctgtgtgtgtgtgtgtttgtgtacaagCTGTATTAGTGAACAACACATTTGATGTCAAACAAATatcctgaaaaatatattgaaacatGATGAGCAGTTTGAATTTGAAGTGGTGCTTGAAATGCTCAAAAATGAGCCAgaacatgttttcttttagatttgTTATGGGCTTGCATGACAGTGTAAccagtatgtttgtgtgtgcgtgttttggGAAGAACTTCAGCCTTGGAACCCtggggttttttgttttagtgtttgtggagtttataaatgttacagttgattttgaaaatgtgaatttatgtGCAGTAGTGTTCAAagtaaatattcagtttttgtttttgtttttctttatttcctggaataataattttcttgtgGCGGTAGTGCATGTTGGTTTCCAGCCGCCATTAAAAACCAAGAAGTAGAATTTTCTGAATAATCTCAGACTTTCAAACCCTTATGTAtatcttcctttctttttctctttctctgtagtGTGCTTTAGAAGACTGCAGTATTGAGCTGAGTGAGCAGTATGAGGCTCTTATGAAGCAGCATGCAGCGGAGCAGGAGGAGCACAACCTCCATGTCCACAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 68407 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 68407 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 68407 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 226143 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 332057 13712680 ~ 13713420 (-) True G36297
TU53878 lncRNA upstream 219391 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 222969 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 253919 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 254257 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 255063 14311768 ~ 14320994 (-) True G36537
XM_043239655.1 mRNA downstream 12891 14028417 ~ 14032586 (-) True mpzl2b
XM_043239654.1 mRNA downstream 20925 14014414 ~ 14024552 (-) True scn4bb
XM_043239552.1 mRNA downstream 35941 14001934 ~ 14009536 (-) False tmprss13b
XM_043239081.1 mRNA upstream 7844 14064549 ~ 14086476 (-) False si:ch211-284e13.4
XM_043239082.1 mRNA upstream 7844 14064549 ~ 14086476 (-) False si:ch211-284e13.4
XM_043239080.1 mRNA upstream 7844 14064549 ~ 14086476 (-) True si:ch211-284e13.4
XM_043239079.1 mRNA upstream 23197 14079902 ~ 14086478 (-) False si:ch211-284e13.4
XM_043239078.1 mRNA upstream 23198 14079903 ~ 14086478 (-) False si:ch211-284e13.4
XR_006251003.1 other downstream 35941 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 35941 14003214 ~ 14009536 (-) False tmprss13b
TU53547 other downstream 197418 13846378 ~ 13848059 (-) False LOC122345901
unassigned_transcript_957 other downstream 200518 13844887 ~ 13844959 (-) True trnam-cau_27
unassigned_transcript_956 other downstream 206515 13838890 ~ 13838962 (-) True trnam-cau_26
TU53907 other upstream 235358 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 1149246 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1239313 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 1293311 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1516406 15573111 ~ 15574817 (-) False alkbh2

Expression Profile