RNA id: XM_043238805.1


Basic Information

Item Value
RNA id XM_043238805.1
length 4207
RNA type mRNA
GC content 0.50
exon number 24
gene id atxn2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15534694 ~ 15554686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGGCTTTTCAGACTGTTTAGGTCTATCGGTCAGTGCTGAAGCCCCGCGTGAACTGTgtatattactgaaaatatcgcacttaaaataacaaaacggCGAAATTACCgggttggtgtttttgttgacatttgAAACATATGGATAGTCCGCGCTCTGTTTTTAAAACGGGCTAAATTGTCTCTGTTCAGGAGGAATTAAATCAGCAGAGCTAGCTGAAGTAGCAGGCAGCGTTAGTGGAGACTTGAATAACTAGAGGAGTAGCTTTACACGTTGGCTGTCACTAGATCAACTGTCAGCTAACGCGTCAAATAGCATATTCTGCACTCGTCCGCGGTGTAAAACGTTTTCTCAAACAGTCAGAAAACTCTGCTCAAGCTGTCGTTTATGGGATCACCATGTCCATGAAGCCGCAGGCCGGTGGTAATCGCAAACCCGGCGGAAGCAACAGCGGAGCCGCTGCGGCCTCCGGTACCGGGGGAGCAGGAGGAGGCGTCGGACGCCAGAACATAGGAAGAGGACGGAACAATGCCAAAGGACCCTCCACTGCAGTGGCCTTCAGTGGAGTTTATGCAAACATGAGGATGGTTCATGTTTTGACTTCAGTTGTGGGTACCAAATGTGAACTTAAGGTTAAAAATGGGCTGATCTATGAAGGGGTTTTTAAGACCTATGGCCCAGAGTGTGATATTGTCCTGGATGCTGCACACAGAAAGAGTGTAGAACCGAATGCGGGCCCTCGCCGTGAGGATATTGTGGAAAGCATCATCTTCAAGTCCTCAGATGTAGTGGTAGTTCATTTTAAAGATGTGGACCTCAACTATGCCAAGAAAGTCTCATCAGATGCAGACAACTTCACAGACAGTGCAGTAAGTGCCCGTCTGAATGGAGAGCACAAAGAGAAGGACCTGGAACCCTGGGATGGAGGGGAGCAGCACATCTCTGGCAGCATGGAATCTCTTGACACTGATctgTCAAATGGCTGGGATCCTGATGAGATGTTTAAATACAATGAGGAGACATACGGTGTGAAGTCCACCTATGACAGCAGCTTGTCCTCGTACACGGTTCCTTTGGAGCGAGACAACTCTGAGGAGTTCCTCAAGCGGGAGGCTCGTGCATCACAGCTGGCAGAAGAAATCGAAGCCAGTGCCACCTACAAGGCCCGAGTGGCTCTGGAAAATGACGACCGCTCTGAGGAAGAGAAATACACTGCTGTGGTTCGTGGAGAGAGGGAGCTTCACAGCCTCAACAGGGAGAACAAATACATTCCCCCTAGTCAGAGGAACAGAGAACCAGGGATGTCATGGGGAGCTGGTCGTCAAAACTCACCCAGACTGGTGCAGTGCAGCCCTGGGCCTCCCACACCCAGATCTGGACCTCATGACTACAACGCAATGGATCAGCGTGTGGTCAATGGAGGTCCTCCAAGAATGTCTCCCAAGTCCCAGCGTACTCCTAGACCTCATAGAGTGGCCTCTTGTCGGAGCGGGTCTTCTTCGCTTGATTATATATCCCAAGGTGCATCGGTGGAGGTTTCCGCTCCCCCTCCTACTCACAACAGCCCTTCTGGGGGAACCTGGTCATCTGTTGTCAGCGGTGCACACAGACCTCGATCACCTCGACAAAATAGCATTGGCGGAGGTGCTCCAAGCCCCTCCTGCTTGTCTTCCCCTCAGGCTGGTACAGTGCCAGTAGACTCTGCTACAGCTTCCACAGCAGCGACGTCACCCACAGCAGCCAATCCGGCCACCAACCTGGAAGCATCTCCAATTGAAGAGGcCAAAGAATCAAGAGTACTAGAGACGAGACAAAATTCTCCTAATGCCAACAAGGAAAATGTGAAACCTATTGAAGCTTCTGCAAGCATCTCTCGATCCATCGGAAAGGGACCTCCCAGCATGGCTCCAGACCACAGGAAACAAATagataatttaaagaaattcagTGTAGATTTTAGGTTGCAGTCTAGCTCAAATCCAGATCCAGTTTTTGAGCCCAAGACTCCACGGGACCTTGGAGAAAAGCCAAAGGATCCAGCAGCTGAGAAGAGCACAGTAGATTCAACAGGACCCAAAGTCTCCATGGAGTCTGCCATTAGTGAAGAACCCTCCACTGCTGCGAGCGTTGCCCCAACAGGAAGTAAATCTGGTACCCCTTTGCTTTCTCCTTCCTCTGCTGTACCTGAGCAGAAACGAGGGCCTGATGTGACGTCTCAAGGCGTTCAAACCACCTCACCTCTGGCCAATGCTGTTGTAAAAGACAAGGATGAGAAGGAGGAGAAGAATGACCCAGTAGCAGAgAGTGTTAGAAAATCTACTCTCAATCCCAATGCCAAGGAGTTCAACCCAAGGGTATTTTGCTCCCCTCCTAAACCAGCAACAACCCCTACTCAAACCCGGCCCCAGGGTCAACCCAGCCCCTCCATAGTAGTACAGCAGCCCCCCGCCGTTTATGGCCAGACCATGTTCCAGATGTACCCTCTGACGCCCGTCAGTCCTGGCGTTCAGAAAAGCATTATCTGGAAGCCTCCAGCCATGTACCATGTTCAGGTTCCTCATATGACCATGAGCCAGACCAAGCCCTACAGACCAGGTAAAGTACCAAACATGCCACAGCAAAGACCAGACCAGCATCACCCACCTGGCTCGTCTACAATGATGCATCCAGCTACAGCTGCTGGGCCGCCCATTGTGGCACCAAGCCCAGCCTACTCCACCCAATACTTCACTTGTAGCCCCCAGCAGTTTGCTAGCCAACCTCTGGTACAACAGATGCCCCACTACCAGTCACAGGCCCAGCATGTGTTCAGTCCAGTGATTCAGGGCAGTGCAAGGATGATCACTCCTCCTGGACATGCTCAGCCCAGCCTGGTTTCTTCCTCCACCACTCAGTATGGTGAGCAGACGCATACTATGTATGTGTCACCTACCCCCATTCCTCAGCAGTTTCCCCACCCAAGCTCTACCCTTCACCCTCATCCGCAGCACCCTCAGCCCTCTGCCACCCCGACAGGACAGCCGCAGCAGGGTACTCAGCATGGAGGCAGCCACCCGGCCCCCAGCCCCGTTCAGCATCCTCAGCACCAAGCGGCGGCCGCTGCTGCCCAGGCCATCCATCTGGGAAACCCACCACAGCAGCAAATGTACTCAGCCCTGGCACCCACCCCACCTTCTATGACACCCGGCCCCAACCCTCAGTCTCCTCAAGCCAGCTTCCCCTCCGCTCAGCAGGCTGTCTACATCCACCCCCAGCAGGTGCAGCATGGGTATAATCCTAACCATATGGCTCATGTGCAGCAGGCCCACATGCAGTCAGGGATGGTGCCGCCACATCATGGCACTCCTTCCCACCCCCCGACTATGATGTTGATGGCTACACAGGCTCCTGCTGGCCCTCAACCCGCGCTGCCCCAGGGCACTCTCAACCCCATCCCTGTGTCCTCAGCCACACACTACTCCTACACTCTCACCCCTGtgcaAGGTCACCATCAGCAGCAGCTGTAGAGGATGAAGATCAGAGAACAGCAGTCGATTTGAGTGGCTCCAGATCTTTGCAGAGCCATCTGGTCCCACCTACCACTTACTGGCCAACAAAACTTCACCTGTCTCTAAACTCCCCATAATGGCCATGAGAACCTCAATCATGCTGCTCTTCTGCTACCCACCACCAGTGATTAAGATACACGTACAGGCAAAGATGTGGTGAACtctggcttttttttaaaaaaaaacaaaacaaaagaaagacaagaGTTTTAACGAGGAATCATTTTTCACGTTTCAGTGACACTAGAACTCTTGCAGTGGGTcctaacaataacaaaacagcCCAGATGAGTGAGAAAACTGTGCATAAATAACTGGAACATTTCGTCTGCACCTTCTAAGTTAAAGATAATTCTTCCGTATATTGACAGTATTAACATTACTGTTAAATGCTGCTGCTATAGCTGTGCTCAAGACCTTGGGGTAAATCAACACAACAAAGTGAAATGGTTCTAACCAAACTAAACACAAGAAACTTCCATTAATGAAGATGTTCGGcaaaaaaagcagataaattatttattaatttaatctgATGGCAAAGCCCCATTAGACTTGACCGTTATAAAACTGTTaagttaaaataacttttactttgtagataatataaatgaatttaaaaaaaattaaaaacattaaaaaaagttttaaaaacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 365336 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 629073 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 653629 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 835741 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 882301 14652095 ~ 14652393 (-) True G36631
TU54472 lncRNA upstream 7036 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 7462 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 9412 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 149066 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 158989 15713675 ~ 15713975 (-) True G36986
XM_043238806.1 mRNA downstream 202 15530074 ~ 15534492 (-) True riok2
XM_043239504.1 mRNA downstream 5348 15505966 ~ 15529346 (-) True epg5
XM_043240356.1 mRNA downstream 41024 15480180 ~ 15493670 (-) False dnajb5
XM_043240355.1 mRNA downstream 41100 15480180 ~ 15493594 (-) False dnajb5
XM_043240354.1 mRNA downstream 41670 15480180 ~ 15493024 (-) True dnajb5
XM_043239934.1 mRNA upstream 13333 15568019 ~ 15578967 (-) False alkbh2
XM_043239936.1 mRNA upstream 13333 15568019 ~ 15578967 (-) False alkbh2
XM_043239935.1 mRNA upstream 13333 15568019 ~ 15578967 (-) True alkbh2
XM_043240049.1 mRNA upstream 35198 15589884 ~ 15604332 (-) True si:dkey-65b12.6
XM_043238711.1 mRNA upstream 50751 15605437 ~ 15611094 (-) False LOC122345011
XR_006251075.1 other downstream 167281 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 226254 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 269749 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 1232313 14292063 ~ 14302381 (-) True LOC122345141
XR_006250967.1 other downstream 1477989 14045477 ~ 14056705 (-) True rnf214
TU54482 other upstream 18425 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 18572 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 149066 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 170341 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 172096 15726782 ~ 15727910 (-) False emc6

Expression Profile