RNA id: XM_043238848.1


Basic Information

Item Value
RNA id XM_043238848.1
length 5025
RNA type mRNA
GC content 0.46
exon number 12
gene id rtkna
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16014786 ~ 16066861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGTAATTCACGGTGGACGAAGACGCGAAGATGGTTACGGGGAGAAAGACAGACGTTACTGTGGTCCAGCGGCGCACAGACCGACGGCTTTGTGTTGATTCCACGAGGGCGCGCGGGATGTATTCGTACCGTTGTTTACATGCTCTCTAGGTAAACCTGCTGTTTCCCGACAAACCTACCGGACCGCGACTGTAAACCCTACAGAAGTCAGCAGCACCGCCGCCCCCTCTCCAGCCCCACTGGTTGGCTCTCACTCACCGCAGCTCGTGTGACCCCCTCAGGaccgaagagagagagagagagagggagagacagagcgGCTTGCGATGACAGCTGAGAGATGAGCACGGCCAGATGACCGTGTCAAACACCGACCGTCCCAGGCAAGCGTTCATTCTAACGCTGTTACACAGTCACGTACTGTTTATTGCGGAGGACGGTCATTTGATCACTTGATCACTTCGGAGTTGCGGTGAATGGACTGGATTGCGTAAGAACGCGCGGCGATTTCGGAGTTCCAGCTTCTTCGAGCGACTCTTCAACAAACATGAATAATACGAAGAATCAGCGAGACAGTGACATCCAGAAGAAGATCGACTATGAGATCCGGATGCGTGAGGGCGCATGTAAGCTGCTGGCCGCATGTTCTCAGAGGGACCAAGCGCTGGAGGCCTCCAAGAGTCTCCTCACCTGCAACGCCCGCATCATGGCCTACATGTCAGAGTTGCAGCGCATGAAGGAGGCGCAAGTCATGCAACGGGTCGCACGCAGGTCTTCTGATGCAGGTCCGATGGATGACCGTTCCCCATGTAAAGGCAAAGTAGCCATTTCAGATCTACGGATACCTCTAATGTGGAAAGACACGGAGTATTTTAAGAATAAAGGAGAGCTGCATCGGTGCGCTGTGTTCTGTCTGCTTCAGCTGGGTGGAGAGATCTTTGACACGGACATGGTGATGGTGGACAGGACGCTGACAGACATCTGCTTTGACAACACAATTGTCTTTAATGAGGCCGGTCCAGGGTTCGAGCTGCGGCTGGAGCTGTATAGCTGTTGTTCAGAGGAGGACTACTCAGCAGGCAGCACACCGCGGAAGCTGGCCAGCAAGCTGAGCTCATCTCTGGGAAGGTCAGCAGGAAAGAAAATGAGGGCGGCCTTGGAGCCCGGGGCCTGCAGCCCCACTAGCAATGGAGGAGGAGCGACAATCCTGCTGCCTGTGCCCTCTGTACCGGGCCCTAAATATCATCTTTTGGCTTATGCAACCCTCAACCTCTCTCACGTCCAGGACAGCTTCCGCACACATGACCTCACCATCACAGGAAATGaGGAGTGTTCGTTCTGGCTGCCTCTGTACGGCGGTGTGTGTTCCCGACTGGCGGCTCAACCTCACTGTATGACACAACAGATGATGAGTGGCTGTCTGAGGGTAAAGCTTGGAGGTGAGCCACAAGGATGGACAAATGTCTATGGCGTTTTAAAAGGAACAAATCTCTTCTGTTATCATCAAAAAGAGGACATGGAGGCCAACGTGGAGCCTGTTTTAACTATCGGGATTAACAAAGAGACAAGAATACGGGCCGCAGAGAAGGATCCTCACAGCAAGGCACAGAATATCTGTATCACTAACCAGTATGGAGGAGAGGAAGTGACGCACACGCTCGCTGCAGACAGCAGAGAAGACACCCAGCGCTGGATGGAGGCCTTCTGGCAGCAGTTCTATGATATGAGCCAGTGGAGGCAGTGCTGCGATGACCTGATGAAGATCGAGCTGCCCTCCCCTCGCAAACCTGCCATAGTCACACCGAAGCAGGGCTCCCTGTACCATGAGATGGTTATTGACACGTCTGATGACATCGGAGCAGTCACCGACATCCTGGCCCGTCGTATTGAAGAGTTTGAGCTGAGGGCCCAGCTCGGATCTCCGCCTCACTGGATGGCCATGTTTGACGAAGATCCCCCGAGATCCCCTCACAACCATCAGCGCCTGCCGCCCCACTCGCCCAGTCCTCGCCTGCACAGCCGCCAGCCCCGCAGCCCACGCTGCCACCGCACACCCGGCCTCCTCTCCTCCAACGCCAGCCTGACCTCAGACAGCGACAGTCCCACCAGCGTCAGCCCCTGTTTCCGGCAAGCATGGTCCCCCGACGCCTCTTCCTCCTCCGGGCGCTTCCGGCCCCGTACCCTCTCACTGGACGCCAAGCTCTCCACTCTACGCGGCCGGGGCTACGGTGGCTTCCGGTGCAACTGCCAGCCGCCCACCTCCAGCTCCGCCTCTCCTCGCCCTGCTCAGACTGCCCTGTCCTGCTCCAGTTCCACTTCCAGCAGCAGCTCCAGCGAGGGAAGCAACAGTCAAGAGTCAGACCTGGGCTTCTCTCGACCGTCCGGCGCTCGCCGCAGCTTGAGGAACCTAAGAGCTAAGCTTGACCCCAGGAACTGGCTGCAGAGTCAGGTGTAGAGGTCAGACTTCCAGACTTCCAACTTTCTGTGTCTCCCTGGAAAAAACTGGAACACCCGAGGTCATGTCTGTCATTGTGTTCTCTTTACATAATAAGAACTGAAGTTCTTCTGCCTTTTAAAGGAGCCTCAACAATGGGAATTCAGTACTATTAGTTATATAATACACTACTAATATATAGCATTACACATTGTCTCTTCATGAAAAGCTGATTGTTTTAGATCTTCGGAGAGTGTTTTATGCGAGGCAGACTCCTGGTACGGTGGTTGAAGCAGTTCTTCTGGTGTTGTAAGTACTTTTTGGCCAGTCGTTGTGTCTGTGTGCGCTGTTTCAGATATATGCTTTAGAAAGTGCAGTCAGGATCAGATCAGTTTTCATCATCACTCACATTGAGGCTGGCAAAAACACTGTCGTTTAAACGTTCGGTGTCCGTTAGATTAAAGATcaaagtcttttatgctcatcaaggctgcattaaattgatcacaaTTGCAGtgatgttgtgaaatattattagcgtttaaaataactatttcaaaaaaatacaatattttaaaatcgaaTGTATTCCTGagatggcaaagctaaattttcaggaTTATGACGTAATCATCCTGATATGCcgatttggtgcttaagaaatattagttatttttatcagtgttcatttttaccatttgtgcagatttttatgtatttaggttttttttatgattcttttTGTCTTTACTGGCATTTTTTCCATCtatttaatgcacccttgctTAGTAGTAAAGTATTGATATCTTAAAATCGTGTTGATCCCAAACATTTGGACGCTAGTGTATTTCACGATCCGTGATCTTGGAAACATAGTATTAATAACCTAACGTGTAAAAGTTAGCTTAACTTGACAGATGTAACACAAGCCTGCAAAAAGAAGGTCTTATAATATCAGTTTAATAATATCAGCATTTTTGTCACTGCTCACTCCTCACCGTTGCGGATGTGTACTTGTATGGGTTTTTAGACTTCTATCTTTTGCTTTGGATCCGGTCACTCAAAAGCAGCATTTTTCATTAACGGACATTTGTGGTTGTAGAAATGCTAGACGTGGCTCCGTTTAATCTTTGCTTAAAAGCGTCTAGTAATAGAAGGGTTGCGGAGTTGCAGTGAGCAGTATTTCGCTGGTCTCTGCTCTATGTAAAATGAATTATGCTATAGATGTGATTCATATCTTAAAATACATGATTTGATGCATATTTTACTACAGtactatgttttttttgtgacacCCGACTGAGGAAAATTGCATTACAGTATCTGCTAAAATGTCCGTCTGTTTGCATGGCTTCGGTATATATGCAAAGGCGCAGACGTCACGAGACTCTGTATTCAGGTTTATGTATAATGATGGGATATAATGTGACTCCGTTTACTACCTGTGACTGCAAAGACCTCAGGATTACTGTACATACCTTATCTCACTCGGCAAATGTGAACCCCTATCAGTAAGGAAAAGTCACAAAAATCAGAATGCACATTAACTAGGATTCAGCACAAGCAACGAAACTGGAAGCTGAACGGTTTGGGTGCTACAGTAAAATGGCTGTCTGACGGAGAAGGGTTGCAAAGGCACTACTATGCAAAGCTACAACAGCTCTTCTAGATATCATTTACATCAGCGGtacatgcaatattttaaggTTTTCCTTTTCCTTGTCGGCTTGCAGGTCAGTTTTGTCGAGCACTTTGAGTGTTTCTGTGTCACACGGCATCTTCCAGCTCAAATGAAGTGCGCATTTTCTTGAAGACAATTGTATTagcaatatttacaataatgaaACTCTAGTTGGATAGCTGTTATTGTGATTTCTGTAAAATCTCAGGAGTGAAGTTACAGTCCGTCTtgccattaaaaaatattaaacgtaCAAGTTAACATTTCTGTAATTCACAAAACACGCTCAACGGGCTCAGTATCTTAGTCATCTGAaactgtattgattttttttttttcacacgaGGTTAGCAAATGATAAGATGGGGACACATGGTTTCTTTGTACAATTACATGTGGAGTGTATTACAAATCGGAAAATTGAAAGTCTTGAAATATTATACTAACCTTTCCTCTTAAATTCAGAATTAGCAAATAATAGTATTACGATGCCACAAAATGAACAGTTCTCACTCGAAGGGCCACTgacttgtatttaaaaactgtaaattcattcaaacactgtttgttattgtaaagttttgtaattttcattttgtgcttttattaaagttgtattttaccatattaatttttgttataaataaaattatattgacATTTTATCAGACGAGTAAAGCTCTAACTATCCTGGTAGATAACATTGAATGTTAACCTGGAGGTAAGTTACACTTCAGCAGGTGGTCTGCATGTGTTAGGACACATAACTAATAGATTCATGTACAATAACAATTTATTGTAAAGAATTAcctaaattaaaagtaaacggcatttgtgtgtgtgtttgtgtaattttCTTGATTCTTGCAGTGCttgtttcaaatgattaaatgttcCAGATAAACTCA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54726 lncRNA downstream 36046 15950331 ~ 15978740 (-) False G37092
TU54738 lncRNA downstream 75950 15938120 ~ 15938836 (-) True G37098
TU54729 lncRNA downstream 103913 15906283 ~ 15910873 (-) True G37093
TU54885 lncRNA upstream 288903 16330931 ~ 16332077 (-) True G37212
TU54932 lncRNA upstream 347896 16389924 ~ 16460289 (-) True G37239
TU54933 lncRNA upstream 347896 16389924 ~ 16482086 (-) False G37239
TU54935 lncRNA upstream 347896 16389924 ~ 16458389 (-) False G37239
TU54948 lncRNA upstream 394441 16436469 ~ 16443757 (-) True G37247
XM_043240549.1 mRNA downstream 92179 15915364 ~ 15922607 (-) False si:dkey-245n4.2
XM_043240547.1 mRNA downstream 95668 15915364 ~ 15919118 (-) True si:dkey-245n4.2
XM_043240598.1 mRNA downstream 136309 15875593 ~ 15878477 (-) True grsf1
XM_043240603.1 mRNA downstream 155451 15857240 ~ 15859335 (-) True cxcl20
XM_043240604.1 mRNA downstream 159007 15854920 ~ 15855779 (-) False cxcl11.1
XM_043238442.1 mRNA upstream 42790 16084818 ~ 16087410 (-) True smn1
XM_043240447.1 mRNA upstream 47037 16089065 ~ 16095337 (-) True mccc2
XM_043240822.1 mRNA upstream 53720 16095748 ~ 16114424 (-) False LOC122346134
XM_043240821.1 mRNA upstream 53720 16095748 ~ 16114424 (-) True LOC122346134
XM_043239220.1 mRNA upstream 73362 16115390 ~ 16138163 (-) False si:ch211-204c21.1
TU54710 other downstream 158978 15854934 ~ 15855808 (-) True cxcl11.1
TU54705 other downstream 167750 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 286678 15726855 ~ 15728108 (-) False emc6
TU54666 other downstream 286876 15726782 ~ 15727910 (-) False emc6
TU54865 other upstream 212121 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 334480 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 554827 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 645232 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 645387 16687415 ~ 16713167 (-) False G37277

Expression Profile