RNA id: XM_043238853.1


Basic Information

Item Value
RNA id XM_043238853.1
length 4503
RNA type mRNA
GC content 0.48
exon number 27
gene id mybbp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 287133 ~ 299381 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTCCCCACGTGTGCGCCACATTATCATGGTTGCTGTGATGCAGACAGACATGGGAGAGATCGAGGACAGCAGCGTGAAACCTAAAATCACCGATGCCAAAGGCATCCTCAAACAGAACCGACAATTCCTAGATTACTTCTGGGACATCGCGAAACCCGAGCGAGAAATCCGCCTTAAAGCGATAGAGGACTTAATTGAACACTTGAAGCAGAGCGAGAAGCCGGACGAGTTGAAGTACTCTCTGAAGAGACTGGTGTGCGGTCTGTCTCACGCGCGAGAAGACGCTCGCTCTGGATACAGCGTGGCGCTCGCTCAGCTGCTGAGCGTGTTTGAGGAGATCTCGCTGAAGTCCACGCTAGACAGCGTCAAGGCGCAGCACAACCTCCTGAAGGCCAGAAAGAAACTCTTGAGGAATGCAGCGTTTGGGAATTTCTTCGGGGTGCTCGCTCTGTCTCAGTCCACGCGTCTGCATAAAGAGCCGCAGATCATGCTGGAGTGTGTGCAGCTCCTGCAGACTCTCTCCCAATACAGAGAACACCTGAGAGACCTGCCCAGAAAAACCATGACTGACATCCTGTCAGAGACGTCGACGGAGGTGTTTAAAGAGGTGCTCCTGAGCGCTCTGCAGTCTGACCTGACCTCTGCCCTCAACACCCCCGAGCAGCTGGAGCTCCTCCTCGTGGCCATGCAGAAGTTCCCCTCGGTgctcaaagcaaaaaaactcaAGAAACTATTGGGAGCCACAGCAGTCATTACGAAAGAGAACATGCCAAAGCTTGTGGAAGTTTTAAAGACGGTCGCTCGCTCTGTGAAGAAGGAAAACATTCTGCCCCCGGTGGCATTTGACTTGTTACAGGCATCTCTGCGGGAGGACAACTTCGAGATGTTCTGGAATGAAGCCATTATTAAAGGGATGCTGTCAGAGATGCCTGGACCCACACATTATTTAAGTTTCCGGTTGCTGGGAGCGTCTCTGCCGCTGCTGTCAGTCCCTCAGCTTGAGTTTGTCCTGTCCAGTGATGTGATGAGATACTACGGTCAACACGTCCTGTCCGCACAGCTGGCAGAACGATACAAGTTTGCTCCAGAGATGGAGAAGTACTTGATTGAGTTCATGGAGGGCTGCTCTGACGCTGACAAACAGCACACCGTGGCTCTCGGCTTCACTCAGCTCACTAACCAGGGGTACCCCGTGATCCCGACCTCCTGGCAGCCTCTGGAGCACATGGGTCAGTCAGCGCTGGGGCAGTATGTGGAGTGGCTGATGGGGGCCTTCTGCAAGCCCCAGCTGGACAAGTGCATGGACTTCAGCACCCGCAGACAGATAGGAAACCAGGAGTCTGAAGTACAGAGTGACAGCTGTGTTGCCAGGTTTCGTAAATGGATCACTTCATGCCTCTCTTTCATTGTGGAGAAGCATAAGATTAAGAAAGAGGAGGAACTTGTCATGAAAATGGCTAGgtttatttttttccacgcCGCCTTTGATGTGAAGAAGCCCactccagaaattcctgagacGATGCAGGCTCTCTCAGTGCCCATAGATACACAAACACGAGCCGCCCTCTCTGCAGCCTTTTACGGTCTTCTGCAGGGCCTGAACTCAATGGCTGTTTTAGGTAATTCACCAGAGGCAGAAAATTTGAACTCCAGGAGGACTGTGGGTGTTAAAGCCGATGGAAGCATGTGGATCTACTGTGTGGTCCAGTACGCCAATATGCTCCTCAACCAGAGCAAACACGTCCAGAGCATTCAGACCCTCAGTCCAGAGCAGAGGCAGGGCTGGGAAAGTATGCTGGAGTCGGTGGAGGCCTTGAAGAAAAAAGCGAAGAAGTCTTCCTCTCCTGAACACATGGCGTTTCAGCAACTCTTTCTTCTCGTTGGGGTTCAGATGTTTAAGGCTCCAGCTGAAAGTTTGGAGCTGCTGAATGATTTGCGGACCTGCATGGAGAAAGCTCAGGCTAAGAAATCTAAAAAGAAAGCTAAGGGTAAGAGTTGTGACGAGGAGCCTCACTGGGTGGAGGTGGTGGTTGAGATCCTGCTGTCGCTCCTGTCTCAGCCCAGTCGTCTCGTTCGTAATGTGTGTAAAGCTGTGTTTAGCCGTATCTGTCCTCACCTCACCCAAGAAGCTCTCAGCTCCATCCTGAACgttCTGGACCCCAACAGGGATGAGGATGAAAGTGGAGTTATGGTGactgatgaaaacaaaaacgggaaaaaactaaaacacaaaaaggagGACGAGGAAGAGGATAATGAAGAGGAGGATGAAGAAGGCTCTGATTGCTCTTcatctgatgatgatgatgatgaggaggaggaggatgaagccATGGAGGATGGAGAAGAGGTGGATCAGAACTTCCGTTTGGATTTGATGAAGGTTCTGCAGGGTCAGAACGCTCTGGCCACTGAAGAGGATGGCAGTGATGAAGAGGAACTGGATGATGCAGCCATGATGAAGCTGGACGGAAGCCTGGCTGCTCTCTTCCTGGAGCAGAAGAAAAAGATCCAGGCCAAAAAAAACGAGAAGGACAGACTGCGCAAAGAAAAGGTCCTTGTTCGGGACTTCAGGATAAAAGTACTGGACATGGTGGAGGTGTTCTTGACGAAGCACAGCAGCAGCGCTCTGGTTCTTGGGATGATTGAACCGATGCTTAGCATGATTGAGAACGGGATGAGCTCCGAAACCACCCAACAGGAGCAGGACTTCCTGCGCAAGGCTGCATACATCTTCAAGCATCGACTTTGTCGTGCGAAGTATTACTGCAGGGAGATCGACGGACGAGAGGCGGAGCTTCACGAAATGCTTGAGCGTCTGATTGGCCGAGCCCAGAAACTGACAGACTCATCCGTGTCTCTGTACTACTTCAGTGCTGCTCTCTATGTGCTGAAGGTGTTAAGAGGTGTTGCGAGCGAACAGGATTCACCAACTGCACCGTCAACACCGGCGGAGCTGAAGGTTATGGGTAAAGTGGATGCTGAGAGAGTCACGACTTGCTTCAGAAAAGTGCTGACATCTTTCTTAACGAAGAGGAAAAGCCCTCTCACTGGACAAATGTTCATAGACCTCTTCGAGAGATTCCCTGTGTTTTATGTGAACCTGTTGGACACGCTTGTGGAGTGCATCACTACTGGAGTGAGAGAACATCAGCAGGGTCTGGCCTGTTTCATGGTGCTCAAGGCCCTGCAGTCTAAAGACGTGAAGAACCTGATGTCTGATGCTCAGAGAACTGAACTGTGTCAGAAAGCTGTGGACCAGCTCGTCAAGAGTTTTGAAGATGTACAGTGTGAGAACAAAACGGATCGAGAGAAGATAATCAAGGCGCTAGAGCTCTGTCAGCATCTTGTTAAATCCGTTCGCAATCAGATGATGCAGGTTAATCTGGAGCTCCTTCAGGATGTTCTCAAGTCGATGAACGCTGATGGAAGCCTGCAGAAACAAGGACATCTGGAGAACTCGTACTGGaatgtgatgcatttatttggcGTGCAAAAGCCAAAGGTGGAAAAGGTGAAGAAAGTCGCAGAGGCAGAGCAGACAGAAAAGACCACGAAAAAGAAGAAGGGGTTCCTTCCTGAAACGAAGAAACGCAAGAACCGCAAGAAGCCCACCGTCCTGGAGGGAAAAGAGACGCCAGCCCCTACAGAAACCCCCGAAGGAGCATCAGGagaaggaaagaagaaaaagaagaagaacaagagGAGGAAACAGCagggaggagaagaagagagacaaAATCAGCCCGCcgcaaagaaaatgaaaacacaggagcaacaaaacaagaagaagaagaaaaagaaaggaggaCAGCAGAAAGCTGATGGGCAATAATCAGGCTGAAAACGATTAGAAGTGTCGCTGTCTGTGACGTTCAACACAAACTGTGGGCCTGGCCTTCAGAAATCTGACTTTAAGACCAGTTCTGTTTAGAGAAATCAGCCACTGTGAAGAGAAACTCAGATCTGTGTTATTTGCCCGTTTGTGATTACTTGCATGAtagaatttttgtaaaaacaatggATGAAAtactaaaaggtttttttattcttgttgtGTAAAGTACAGTGTTTGCATCAGTCGTGTCAGTTATTTGAAGAGGTGCGTTCTAGTTACACTTTAAAACTATACAAATAACAAGTGGGAATTAACAACCAGCGTTACATTTCGGTATACAATGTTTTGTTGTGCTCCACTGTTAGCACGGGATTTTTGCGTTTcttaacattaaacattattttgaccCTTTCGACAGAattattttatcagttttaaCATGCATTGTAGTGTTAAATCAATCTGCctgctttgcaaaaaaaattatttttatgaaatacataCCGATcagtaaataactttaaatatatattcttaatattatgttttaaataatttttgatcaTTGTAATCTGATCTATATACAAATTGCATTCACATAATGCACCATAATATTTGTACTGCAGTTATGTCtgattaaatgcacattattatttttta

Function

GO: NA

KEGG:

id description
K02331 POL5, MYBBP1A; DNA polymerase phi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47337 lncRNA downstream 82597 162490 ~ 204536 (-) True G32086
TU47339 lncRNA downstream 82597 162490 ~ 204536 (-) False G32086
TU47357 lncRNA downstream 261241 25514 ~ 25892 (-) True G32102
TU47355 lncRNA downstream 269618 16470 ~ 17515 (-) True G32100
TU47354 lncRNA downstream 271828 12703 ~ 15305 (-) True G32099
TU47414 lncRNA upstream 51586 350967 ~ 352079 (-) True G32150
TU47396 lncRNA upstream 82671 382052 ~ 384236 (-) False kcnv2b
TU47450 lncRNA upstream 132249 431630 ~ 431890 (-) True G32177
TU47471 lncRNA upstream 156736 456117 ~ 482271 (-) True G32186
TU47475 lncRNA upstream 159099 458480 ~ 465004 (-) False G32187
XM_043238854.1 mRNA downstream 835 278951 ~ 286298 (-) True paip1
XM_043238657.1 mRNA downstream 8849 273168 ~ 278284 (-) False c5h5orf34
XM_043238656.1 mRNA downstream 8849 273168 ~ 278284 (-) True c5h5orf34
XM_043238360.1 mRNA downstream 14318 262368 ~ 272815 (-) False LOC122344789
XM_043238361.1 mRNA downstream 14681 262368 ~ 272452 (-) True LOC122344789
XM_043238651.1 mRNA upstream 2257 301638 ~ 313028 (-) True fgf10b
XM_043240367.1 mRNA upstream 17460 316841 ~ 339731 (-) True adamts12
XM_043240377.1 mRNA upstream 72290 371671 ~ 372818 (-) False LOC122345880
XM_043240376.1 mRNA upstream 72290 371671 ~ 372818 (-) True LOC122345880
XM_043240378.1 mRNA upstream 83464 382845 ~ 387878 (-) True kcnv2b
TU47390 other downstream 37378 246943 ~ 249755 (-) False rictora
TU47359 other downstream 250785 35777 ~ 36348 (-) True G32104
TU47358 other downstream 252416 33779 ~ 34717 (-) True G32103
TU47356 other downstream 263184 20139 ~ 23949 (-) True G32101
XR_006251108.1 other upstream 1013223 1312604 ~ 1336184 (-) True castor1
XR_006251110.1 other upstream 1013225 1312606 ~ 1336184 (-) False castor1
XR_006251109.1 other upstream 1013225 1312606 ~ 1336184 (-) False castor1
XR_006251111.1 other upstream 1022915 1322296 ~ 1336187 (-) False castor1
XR_006250937.1 other upstream 1043225 1342606 ~ 1354414 (-) False lrrc74b

Expression Profile