RNA id: XM_043238855.1


Basic Information

Item Value
RNA id XM_043238855.1
length 4349
RNA type mRNA
GC content 0.46
exon number 21
gene id smtnb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27343490 ~ 27389998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGGCATGTAGTCTGTCTTGACGCCGCTGTGAACCGTGAACCCTGGAGCGTTTCAAAACACACCGCTGCGGTTCGTTAACAAGGAGAGCGTTTCATTTTACGTCTTTTTAAAGCTGTACCACAGACGTGTTTGTCgcttttttttctattagaGAGCATCTTTCTCAAGTTAACAGACAGGCGGAGAGCGGCTCTTTAATGCGTTCAAAGTGAGCCtctttattatgtgtatgtgacgGTTAATTTAACGGTATTATACTCTCGTATCGAATGAGCTAGCCGTTCAGAGCGGTAATAAGATGTCTGAGAAGATGCAAGAGAAGCGATATTCCAGCATGGACGAGTCCTCGCTCCGCAATCTGCTTGATAAAACTATCGACATAGACGAGCGGCGTCTGATCCGTACAGCGATCCGGGAGCTGCGGCGCTGTGAGATTGAAGAAATGGAGGCTGCGCTAACCAGCAAGCGCTTCAGACGGGCCCATCAGAGCAGACACGAGGATAAGGAAAACCAGTGCCGTCCTGATTTGACAGCTTCATTAGACGTACTGTCAGGGAAGATTCAAGCTATGAACAACATTGAAGAACTTACTGGACTGtTACAAAGCGCCAGTGAATACGAAGAAAGAAAACTCATTCGAGCAGCCATTCGCCGGCTCAGAGATGAGGAGATACGAGGAGCATTAGAGAAGGTTCAGACCGCTGGCCAAAGAACAGAGCAACGACAAAATCCTCAAAGCAGCTTTGACCTACAGTGTCTCATTGCTAGTAAAGCTGACCGCAGCTATTCAaACGATCTAGAGAACATCAAGGCAGAAGCACTCATCAGCCAATCGGAGAGAATTGAGAACCACAGAGAAGCCTCGAACCCTGACATGGTTTTAGTACTAGATCCTTTGGTCAGAGAGAAAGTCTCCTGCCCTCTGACCCAGCGGATCCAATGCGATCATGGCTCACCCTCAGAAGTCATTCCTTCATACCGAGAGCGTTCAGACTCCGGAGAATCGAATGATAGCAGCTCCCATCAGAGAAAGAGGCTGAACTCCAGCGCCTCAGATCGTAGTCACGACTCCCTGTCTACTGCTGAACCTTCTCTGAGGGACCAGAGCTCACTGTCAGATCCAGCCGGAGAGGAAGTCAGGGCTGCTATGAATTCAGAGGCTCCTCAGATGCATGGAGACCTGAAGAAACTTGACAATGGCATGGAGACAACTCTCTTTCAGAGCACAGCAGGTTCACAAGCATGCACACTGAGTGAGACCAGTACAAGAGCTGAAGACGTCTCAGGACAGAAGatcACATCGGGTAGAGGTGCTCTGTTAACTTCTCTTACTAATGGCAAGGATACAGattttaaaaacaaagcctcACTCTCTGGGCCCGTCATTCGTGCAAACTCCGTTCGCGACAGGATGCGCAAGTTCACCGAACCTGTTACGAGTGCACCTAAAATCAGCCACAGTGCTTCTCATTATACAAACACAATGTCTGCTGAGAGGTCCTGGGACACCTCATCCTGTTCTTCCTCCATCCCAAAGAAAGAGAGGAATGTCACTGAGAACATGTTGGCCCAGCCCAGGCTTTTCTCCAGCCAATCACACGCTGCAGTGGGCGGCTCACACGGCCGCACTGAAAATGTCAGGCGTGCGTGTAGTGGTTCAGAAGAAGTGCAGACTCCTGAGGGAGAAGCATCTTCAGGGACCCACGACACCCGGGGTGAACCCGAGTCCAACATGAAGACCTTCCTCAGCATTGAGATCAAAGACGGAAGAAACACGACTTCACACTCTTCTCTGTCATCGTCCTCTACAGCCGTGAACATGGGCCCTCGAATCCTCACATCTGCTGCTCCACAGAGAAcagAGTTGACGCTTGGTTTAAGAGCAATGCCGTTCAAAGTGACCAGCTCAAGTCTCTCATCAGGATCCTCTGTTAAGatggAGACGGAGCCCATATCCCTTGTGGGTGAATCTGTGAGCGAGGCTTCCCATGATGTTCCTGTGCTTCCTAACGGCTCATCCATGACCTCCATCAAAAATGAGGTGCAAAGCGATAAGCTGACCTCAGAGAAGCTACAAGAGATTGAGGATGAGGAGATTCTGGacaaaatgCTTGATGATTGCAAAGATTTTGAAGAAAGGAAAATGATCAGGACCGCAATGAGAGAACTACGAAAGAAAAAGCGAGAGGCTAGACTGGGATGTACACAGGAGGAAATGGACCAGAGAGAGAAGGAACGAGATCTGCGTCTGCAGGAGCTCAGACAGCAGCGGGAGGAGAAATCTCAGAAAGGCCGGGTGGGTGCAGACGCCAGTGAAGTCGTGATGAAGAAGATGGAGCGCTCCGCAGACGGCTCCACTATCAGTCACGTCACCAATCGGGTCACCCATTCAGATGATCGAGGCAGGACGTCCCACAGCACTATCATGGAATCCAGCTATGTTCAAAAGACAGACAAAGGCACAGTGCAAACAAAATCCTACAGTTTCTCCAGCACCACATCCACTAGGAAGGTTGGCAGtgtttttgaccGTGAGGACAACACATCTCGTAGCTCCAGCAGAACATCAGCTCTTGAGCGCAGACAGGCAGAGAGATCGGAGCTGATGAGGGCTCAGACGTTACCCAAAACATCTGCAGCACAGGCGCGAAAAGCCATGATCGAGAAGCTCGAGAACACTGGAGGCTCTGGAGTCAACTCGGCCATTACTCAAGTAAACAAGGTGCAGCGCTCCACAAGCTTTGGTGTCCCCAACGCCAACTCCATCAAACAGATGCTGCTGGACTGGTGCAGATCCAAGACCCGTTCCTATGAGAATGTGGACATCCAGAACTTCTCCTCCAGCTGGAGTGACGGCATGGCGTTCTGTGCTCTGGTGCATAACTTCTTTCCAGAGGCCTTCGACTACTCCAGCCTCAGTCCTGCAAACCGCAGGCAGAACTTTGAGGTGGCCTTCAGCACGGCAGAGGCCTATGCTAACTGCATGCCCCTGCTGGAGGTGGAGGACATGATGATCATGGGTAAGAAACCAGACTCCAAGTGCGTGTTCACGTACGTTCAGTCACTGGTGAACCATCTGCGCAGACATGAGATGATGCTGGCGCGGGCACAGCAGAACGCTGACTTCTGACGCTCTACAACGCtgtaacgtttttttttttcattctgatcCTGTTACATTTCAACAGTTAAAATTGCGTTTACTTTCCAGGCAGATCTAAACGACTCCTAATGTAACAGCTGTACAAActcattatggatttttttttttatgaatgaattttttttgtttgttttaacgaACAGTAGtttgctccaaaaaaaaaaaaaaaaaagcatcaagaaATGAAAACTGCAAGTTATATTTAGTCACTCCCAAGATGCCTCTTTTACTTGATTTCATGTGCAAAAAAACGAAACATGATTTTATGTTGAATGCCCATATCTAcggttttaaaagcttttacgGTACTGCTGCTGTCAATGGAGCTCAGACCTGCATGCTTTCACGAGCTTACTTGAAGTTTTAGTTctgtttccaaaagaaatgaaggttatattgttataatttgTATGCAATgtcgtttatttaaaaaaaaaaaaaaaaacgttgcaAGAATATTAATCTCACCGCTTGTTATGGCTTCAGCCGTTGAGTGAACTcatgaactgtttttaaatgtttttcacttaATTGAAAGTTTGGTTTGACACTGAACACACGGCATTAGGTTAGTTCCACGGCAGATAGACGTCCGCCAAGAATTGAACATACACATTTTGAAGTGATATCAAATGCACAAGCATGCATGTATAGATGCACTTACGATCTGTCCTTATTTATGGACGAGTATATTTTGGATTTGTTGATATTCCTGAACTTCAGTCGGGAGTTCATCCCAAAACATAAGCTTAAAGGGTCAGTTTTTTTGTACATCTTTACAACACGGCTTTCAGCCAGAAACAAAGTGTATTTaaacagtgtgtatatatatatatgagtagcCCTAGTCATGAATTTGAAAAGAAGAATATTTTAGCAGTAAATTCACTTTCAGGtcaattatgtttatatatatttggttcTAAAGATGGCTgtagttttaattgttttgaagactgcatataatttaattttgaagaCGAAACGCAGCAGCCACGCCGGAGAGTGACTTTGCTTGGTACTTGAAGGTTGCATGAGTATGGCTCATTAACACTCACTTACACTGAAAGGTGAACATTAACATTGTTTGTACACACTCATTCAAAACCTTTTGTTCACTCAGTATTTCGCTACACCATGGTTTTGTATAATAGTCATTAAAACCATAAATGAcaccaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59046 lncRNA downstream 57296 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 76261 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 109328 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 117928 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 154268 27188850 ~ 27189222 (-) True G39857
TU59120 lncRNA upstream 148490 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 148942 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 260452 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 358462 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 505645 27895643 ~ 27895961 (-) True G40021
XM_043239463.1 mRNA downstream 8692 27312889 ~ 27334798 (-) True inpp5jb
XM_043238697.1 mRNA downstream 35282 27302259 ~ 27308208 (-) True mat2ab
XM_043238696.1 mRNA downstream 50004 27288172 ~ 27293486 (-) True usp39
XM_043238698.1 mRNA downstream 63099 27277047 ~ 27280391 (-) True spaw
XM_043238359.1 mRNA downstream 170596 27168265 ~ 27172894 (-) True LOC122344788
XM_043240502.1 mRNA upstream 1396 27391394 ~ 27393627 (-) True LOC122345946
XM_043240820.1 mRNA upstream 5391 27395389 ~ 27398741 (-) False isca1
XM_043239914.1 mRNA upstream 9415 27399413 ~ 27414999 (-) False tut7
XM_043239913.1 mRNA upstream 9415 27399413 ~ 27414999 (-) False tut7
XM_043239917.1 mRNA upstream 9415 27399413 ~ 27414999 (-) False tut7
unassigned_transcript_1081 other downstream 1232088 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1233920 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1242081 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1251494 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1253702 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59237 other upstream 499125 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 865830 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2070587 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2227001 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2536387 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile