RNA id: XM_043238862.1


Basic Information

Item Value
RNA id XM_043238862.1
length 4855
RNA type mRNA
GC content 0.47
exon number 20
gene id zfr
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15293856 ~ 15308440 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCATGTGCGGTAAGAGCTATATCCTGGTACGACCTTCTCATATAAAAAGGCAGGGTTACGAGTCAGAGTTCGTAAGAGAATAGGAAACCAATGATTCCCATATGTCCAGTAGTCTCCTTCACCTATGtgccCAGCCGGCTAGGTGAAGATGTCAAAATGGCCACCGGCAACTACTTTGGATTTACCCATGGTGCTGCCGCCCAGTACAGTCAGCAGCCGGCTGCTGGGGTAGCATACACCCACCCCACTACAGTGGCCAGCTATACTGTGCATCAAGCACCTGTGGCGGCACACACGGTGGCAGCAGCCTACGCCCCTACAGCCGCCACGGTTGCTGTTGCTAGGCCTGCACCAGTTGCAGTAGCAGCAGCTGCGGCTACTGCCGGAGCTTATGGAGGTTACCAGCCAACCCACGCTGCCACGGATTATGGGTATGCACAGAGACAACCGGAGGTACCCCCACCACCGCCACCTGTTACCTCACAAAACTACCagGACTCCTATTCCTATGTGCGGTCCACAGCTCCAGCTGTAGCGTATGACAGTAAACAGTACTACCAGCAACCTGCAGCTACACCGTCTGTGGCCGCAGCAGCAGCCCAGCCTCAACCCACTGTGGCCGAATCCTACTATCAGACAGCCCCTAAAACTGGATACAGTCAAGGCGCCACTCCGTACACCCAGACCCAGCAAACGCGTCAGGTTACAGCCATAAAGCCAGCCACCCCTAGACCTGCCACCTCAACCTTCTCCATTTACCCAGTGTCCTCTGCTGTACAGCCGGTCGCAGCCGCGGCAGCTGCCTCTGTAGTACCATCATATTCTCAGAGTCCCACCTACAGCACCAATGCTGTAACGTACTCTGGAACTTCATACTCTGGCTATGAAGCTGCAGTTTATTCAGCTGCCTCTTCCTACTatcagcagcagcaacagcagcagaaaCAGGCGGCTGTCGCCGCAGCCGCCACTGCCGCATGGACCGGCAGCACTTTTACTAAGAAAACTCCCTTGCAGAACAAAACACTCAAACCTAAACAACCCCCTAAACCACCACAAATACACTACTGTGACGTCTGCAAAATCAGCTGTGCTGGACCCcagACCTATAAGGAGCATTTGGAGGGTCAGAAGCACAAAAAGAAGGAAGCTGCATTGAAGCTGTCACAGAGCAGCAGTAGCAGCAGCGGAGGCGGGAGCTCCGCCCGCGGCACACAGAATCAGCTACGCTGTGAGCTCTGTGACGTTTCCTGTACTGGAGCTGATGCCTACGCGGCGCACATCAGAGGAGCCAAACACCAGAAGGTTGTGAAATTGCATACCAAACTAGGAAAGCCAATACCATCCACAGAGCCCAGTGTTGTTTCCCAATCCTCCAGCTCAAGTACAGCTGCTCCTAATAAAACTGCCAGCTCCAACATCAGCAGCTCAACAAGCACATCGTCCAATCTGTCTTCTTCCTCTGTTTCTGCCTCTTACCTAAAATCTGGCAGCATGGTCAACAACATGGCAGCTTCAGCTGCACAAGGCAAGAGCCCAGTGCCCAGCAGTGTCTCGGTCAACAGCACCTCTGTCAAGAAGGTCAACACACCCAAGATCAACTTTGTTGGTGGAAACAAGTTACAAACCACTGctgttaaaaatgaagaatCCAAGATGGAGGCAGCTAAAACGGCACAGTCTGCTGTGTCTTCACAAACACAGGACCTAAAGAATGACATTCCTGACCCTCTGTCACCTCAATCAGCACTTGCAGCCCTGCAGAGTGATGTTCAGCCTGTCGGACATGACTATGTTGAAGAGGTAAGGAATGATGAAGGAAAGGTTATCCGGTTCCACTGCAAACTGTGCGAATGCAGTTTTAATGACCCGAATGCcaaagaaatgcatttgaaagGAAGGAGACATCGACTACAGTATAAGAAAAAGGTGAACCCAGATCTTCAGGTTGAAGTGAAACCTAGCATCCGAGCCAGGAAGATCCAAGAGGAAAAGATGAGGAAGCAGATGCAAAAGGAAGAGTATTGGAGAAGACGTGAAGAGGAGGAGCGCTGGAGGATGGAGATGAgGCGCTATGAAGAGGACATGTATTGGCGACgtatggaggaggagcagcacCACTGGGAAGAAAGGCGCAGAATGCCTGATGGTGGTTATCCACAGGGTCCACCTGGACCTCCTGGTCTTCTTGGAGTGAGGCCTGGGATGCCCCTTCCTCAACCACAAGGACCAGTGCCTCCACGTCGCCCTGATTCCTCAGATGATCGGTATGTGATGACCAAACATGCAGCTATTTACCCATCTGAGGACGAGCTCCAGGCCATCCAGAAGATTGTATCAATCACTGAACGAGCACTTAAGCTTGTCTCTGACATCATCACAGACCAAGATGCAAGTGCAAGTGCAAAGGGCAAAGAAGAggataaagaaaagaaagagccTCCCAAAGACAGAGTGCTGAAAGGAGTGATGCGGGTAGGCGTTCTCGCCAAAGGGCTGCTTCTACGAGGAGACAAAAATGTCAACCTGGTCCTCCTTTGTTCTGAGAAGCCTACTAAGAATCTGCTAACACGCATTGTGGAACATCTTCCCAAACAACTCACGATGGTAACTCCGGAGAAATATGAGGTAAAAGGCTCCATCCAAGAGGCTGCCATTATCCTTACTTCCTCTGCTGAGCCCAAGATGCAGGTGACCATCACCCTCACCTCGCCTGTCATCCGAGAAGAAAACACCCGGGATGGAGATGTAACCTCGAGTATGGTGAAAGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCCCTACGCCACGCTAAGTGGTTCCAGGCTAGGGCTAATGGACTCCAGTCATGTGTGATTGTCATTCGAATACTGCGTGACCTTTGTCAGAGAGTACCCACCTGGTCTGCATTTCCTAGCTGGGCTATGGAGCTGCTGGTGGAGAAGGCCATCAGCAGTGCCTCTGGACCAATGAGCCCTGGAGATGCTCTGAGAAGAGTCTTTGAATGTATTTCCTCAGGCATTCTGCTGTATGGTGCTCCAGGATTGATAGACCCCTGTGAGAAGAATCCAACAGATACTTTGGCTACCATGGAAGAGCAGCAAAGAGAGGACATTACATCAAGCGCTCAGTTTGCCTTGAGACTGCTGGCGTTCCGTCAGATTCACAAGGTTCTGGGTATGGACCCCTTGCCTCAGATGAACTCGCGCTTCAACGTACGGAATAACCGCAAGAGACGACGTGACAACAGCGACGGGACCGATGGATTTGAAgctgaaggaaagaaagacaaGAAGGACTACGAGGGGTTCTGAAGTGCACTACAGTACAGCTAACCCAGCTCTCCCCGCACCCGTTGTAAATCCTGTTCATTCCAGGAATACGAAATGTTGTTTCTGTTGACCTCTGTGCATGCTAATTACTACTACCatgaagttttgtttttgagctCTGGTGAAGGCCCAATGATGGCCACTTGGGGAAATGCCAGGCTTCATTTCCTTGACGCATAGACCGTAGTCCATCTCTGTCGTTTAGTCTGGTGTCTTGGTTTAAAGATTTGAGATGCGCACAAACCTGAGAGGTTAAGCCTAAAGTTCATGCTCCATTCAGCACGTTGGATGTAATATTTCGCCATCTTCAGATCTTTTACGCGTTTCAGGCTAGGCATTTGTAGACGTCTGAGCTGCGTACTTGTGTCAGTGTGGAACAGATTCTTTATCTTATCCTTCCAGTCACACATGTAAAGTAACTTTGACAATGGCTTCCTTGGCTTTGCAATAAATTGTTTAGGTGTTTTTGTAACTCATGTTTAGAGACATTCCTCTTAAAACCACAAGATCGAGATATGATGATTGATTCATGCGACGCATTAGTCCTGTTGTGATGAATGTGACGTTGACTGGACGTGGATTTTATACAAGCATGTATTTTCCATTGCTGGCGCATTCTGAAGGTTGGGATGGCTTTTAACCATTTGTAAATTTACGTCAATGAAACATCTTTACAACCCTGTTCCTTCTATATGCTTAATCTAAGTGATGTAAGGCTGCACTTGTCCCAAAGTTAGGCTGTAAGTGTGCGCTGATATTCCCAGGCCTCTGTGGTTTAGCTGTATCACGTTTCTGAAAACCCTGACCCTGAAATCAGACCTGGGCTTATACCATAAGTATCTATCAGTTGTCccaattagtttaataaagaaTCTTAAGTTACCAGTCAGTTTCATGAATACAGTTTACCAACTAAGCCAGgcttattttagttagtttgacttattttgaaacaaatcaaataacAGGCCCATTTGCTAAATTAGTTTGAAACAGGCCCCAGATCAATTGTTCACACAAGGAAGTATTAAAAGCAGAAACATTTGGTCAAAGacgtatatttttttttccttttataaattgtaattgaCCCAGGTCtgcctgtgttttgtgttcataaTATTGTAAACCCtaaatgtatctttaaatgTGATCATAGAGCTGTATGATCTCTAATATGATCATTTACTAAGCCTGTATCTAATCTTGCAATAGATCTTCAGAAACAAATGCCTGTATGGTTTTAAAGCACAGGAATGTTGtttatgttcttttgtttttaatggattttgttttactggttaATAGACTCATAGTTGCTTGCCCTTATTTTTGGTTTCTGATTCAAGTTTGTTGAATATCTGTTGAAGATGGGAGGGACACAAGTGAAATATCGGTATTGTAACTGCAGATTGATGTAGACTTACCCTTTGATGCTTGTCATTCAATGTCAAGGTACTACTGCATTACAATGCGTATAATAAAGACATTTCCAGAATTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13203 ZFR; zinc finger RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 124498 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 388235 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 412791 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 594903 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 641463 14652095 ~ 14652393 (-) True G36631
TU54472 lncRNA upstream 253282 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 253708 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 255658 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 395312 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 405235 15713675 ~ 15713975 (-) True G36986
XM_043239960.1 mRNA downstream 974 15280214 ~ 15292882 (-) True mtmr12
XM_043239676.1 mRNA downstream 14584 15268676 ~ 15279272 (-) True golph3a
XM_043239713.1 mRNA downstream 28911 15205951 ~ 15264945 (-) True pdzd2
XM_043239714.1 mRNA downstream 47958 15205951 ~ 15245898 (-) False pdzd2
XM_043239109.1 mRNA downstream 94019 15174388 ~ 15199837 (-) True parp8
XM_043240656.1 mRNA upstream 41576 15350016 ~ 15367413 (-) False npr3
XM_043240654.1 mRNA upstream 41576 15350016 ~ 15367413 (-) True npr3
XM_043238413.1 mRNA upstream 142584 15451024 ~ 15457371 (-) True eef2l2
XM_043239300.1 mRNA upstream 163652 15472092 ~ 15477073 (-) False akr1a1a
XM_043239301.1 mRNA upstream 163652 15472092 ~ 15477073 (-) True akr1a1a
XR_006251010.1 other downstream 28911 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 991475 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 1237151 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 1237151 14045477 ~ 14056705 (-) True rnf214
XR_006251004.1 other downstream 1284320 14003214 ~ 14009536 (-) False tmprss13b
XR_006251075.1 other upstream 41576 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 264671 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 264818 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 395312 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 416587 15725027 ~ 15727910 (-) True emc6

Expression Profile