RNA id: XM_043238865.1


Basic Information

Item Value
RNA id XM_043238865.1
length 4085
RNA type mRNA
GC content 0.44
exon number 27
gene id tpcn1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11348628 ~ 11361935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTAATGCTCCGGGAGATGATTTGTAGGCTTTCCGCACAGGCGGAATTGATAGTTTTCGTAGAGCAGTGCTGTTTCTCCCTGCtttataaaagcttttgtaatgttgaaaatggagaaaaatgtGGAAGTGGATCTAATACAGAGGGATTGTTGAGAGAATCGTGAACATCAGCACAGGATTCCGTTCCGCTTTCGGACCGCTGGCCACAGCAGCTGCAGCTGGCACAATGAAACTTGCATGTGCGAGTGCATTGTTGATCATTTACCCTTGCAGTGCTAAAAACTGCTTGACCAGTGACATGCTCTCTGTCTGACTACTGGGACTTGGGGCCGATCACAGGGGCTGCCATGGAAATCAGTAGTACACATGACAACATGACTGTGCTGACACATGATCGGCCAGTTCAAACGTCCTCGTTCTGCCAGCAGTTAGCATCTATTGATGGGGCAGGAAATTATGATGTTGTGAATAATGTTGTCATTCCGACCCCAGGAGCACCAGACCCCAGGGCCCAGAATTCTTTGAGGCAGAGTTGGGAAATGAACTACCAGGAAGCAGCAATATACCTGCAGGAGGGAGAGAATAACGACAAGTTTTTCACTCATCCGCGAAATGCCCATGCGCTCAGTGCCTACCTGTTTGCTCACAATCACCTTTTCTATGTGATGGAGCTGCTGACTGCGGTGTTACTCAtgcttctgtctctctcagagGCCCCTGCCGTCCCCTTTCTCCGCTTGGACGTCTATGTTCATGCGACACTGGAGTTATTAGCATTAGCAATGGTGGCCTTTGAGTTGTGCATGAAGCTCCGATGGCTTGGCTTTCACACCTTTATTCGACATAAGAGGACCATGGTAAAGACATGTGTCCTGTTTATCCAATTCACCGAGGCGATTGTGGTCTTAGTCCGGCAGACATCTCACCTGCGAGTAACAAGAGCCCTGCGGCCAATCTTTCTGGTAGACTGCCGTTACTGTGGAGCCGTTCGCAGAAACCTGAGACAGATATTTCAGTCTCTTCCTCCCTTCATTGATAttcttctgctgctgcttttcTTCATGGTCATCTTCGCCATCCTAGGATTCTGTTTGTTCTCAGCCAACACAGCCGACCCCTATTTTAGCACACTGGAGAACAGCATTGTGAGTCTGTTTGTCCTTCTGACCACTGCAAATTTTCCAGATGTGATGATGCCAGCGTACTCGAAGAATCGTTGGTCTTGCATTTTCTTCATTGTGTATCTGTCCATCGAGCTCTATTTCATCATGAATCTGCTCCTGGCAGTAGTTTTTGACACCTTTAATGGAGTCGAGAAGATGAAATTCAAGTCTCTTCTTCTACACAAGCGATCCGCCATAGAGCATGCCTTCCAACTGCTGGTTAGTCGGCAGAGGCCAGATGGAGTGTGTTTAAAACAGTTCGATGGACTGATGCGATTCTATCGTCCACGAATGACAGCACGGGATCGCTTCCTCACTTTCAAAGCCCTCAACCATTCAGGAGCGACCATGCTGAGTCTCCAGGACTTTTATAAGTTTTATGAAGTGATTGGACTGAAATGGAAGgctCGACGGAGTGGGGAGCACTGGTTTGATGAGCTTCCTCATACTGCTTTCCTCATCTTCAAAGgaatCAATTTACTTGTGAAATCCAAAGCTTTCCAATATGCAATGTATCTGGTAGTAGCAATAAATGGTATCTGGATCCTAGTGGAGACAAACATGTTAAATGATGGCGTCTCGTGGACTCATGCTGTCCCGTGGAGTTACATTATTTTCCTCACAATTTATGGAATTGAGGTCTTGTTAAAAATCACAGGCCTTGGTCCTTTGACATATTTCAGCTCAGGGTGGAACCTCTTTGATTTCTCAGTAACTGTCTTTGCCTTTCTGGGATTAATTGCTCTGGCCTTTGACATGGAGCCCTTCTACTTCATCGTGGTGCTGAGACCTTTTCAGCTCCTCcggttgtttaaaattaaacagcGCTATCGGAACGTTTTGGACACAATGTTTGAACTCTTCCCGCGTATGGCCAGtCTAGGTCTGACTCTGATTATCTTCTATTATTCTTTTGCCATCGTTGGAATGGAGTTTTTTGCTGATGTTGTTTATCCAAACTGTTGCAACACTAGCACTGTTGCTGACTCATATCGCCAGATAAATGTGACCATTGGCAACCGAACATTTCTAGAGGAGGGATATTACTATCTCAATAACTTCAATAACATCCTAAGCAGCTTTGTGACTCTTTTTGAGCTAACGGTGGTGAACAACTGGTACATCACTATGGAAGGTGTGACATCACAAACTACTCACTGGAGTCGCCTTTATTTCATGACCTTTTACATTGTTACCATGGTTGTGATGACAATAATCGTGGCCTTCATACTAGATGCCTTTGTCTTCAGGATGAACTACAGTCGGAAGAACAGAGAGCCGCTTGATGACCCAGAAGatGAAAAGGGGATTGTCTTTGAGACAGAGGTGTCTCAGACTGAAGCTCTGCAGACTCTGGActtgtataaacacacactagGCGTCACCAACCTAAGCTCACTGCAGGACATGTGTGTGGCTCTGGAGCGGAGCGGTCACTCCTCATTAGTATTTGTGGGTCGAAGGTCACGGACCAAGAGTGACCTCAGCATGAAGATGTACGAAGAGGAGATTCAGGAATGGTACGAGGAATATTCCAGAACAAACCTCCAGCCTGATGAGACATTCCACAGAGAACTGGACAGCCCTGAAGCCAGTGCCACAAACAGCATTAATTAACTCGCACACTCTGAATTCTGCATCAGCGTTAActaacacactcactcataccTCCGAGGGACCTTACAACCGTCTTCCTCCCATCGATGGAAAGCACAGGTGTTCCCCGTGACCTCTACATACTCCCTCCATCCACATGGAGACCCACAGAACTCACTTAAAGCCTTATTCCCCAAAAAACCTTAAGGTTCCGTGGCCAATCAGGGAAGCTTGCAGACCAATCATGTGACATGCACTAGGTCCGGGAACCTTCTTCTTCCATGAAATGCACCTCATGACATTTGCCTTGTGGTGGGTGACCCTTAATGATTCAGACTCTCTCGTGGATTTGACAAATGGAGAACGGCGACTGAATGTTTCTGTGGGAGATGAATCAGAACCGAATGTGAGGATTTTAGCACTAAGTGACTCTTTCTCAACAGTCTGAGGTATTGCTTAACCAACAGATAAAAGATTATAGTAATAaactaatgctgtttttaaacaaaagctgCTTTTTGCTGGAAACTTTGGACCTATAGAGAGGCTTATTTTTTcgttgtatataaatatatacatgcagatTAAATGTATGTCAGATGCAGTTGAGAGGCAAgtatttaaaatcagttttaatacAGTACATCCACAGATTTACTCAATATAGGCCAATTTCCCAAGCACAGGTTCATTTTGGACTATAGTATTAGAAATCCAGCCTGGGAcctttcagttcatttaaacgTTTGTCACGTATGAAAAGTTCTTATTTCCTCTGTTTGGAGTTTGTAGAGCTTATAGTATTTTGACAGACCAGTTCTGGTAAGTCCTGTCAGAATCTCAAATTTTACTCCACAGACAGTCTGAGCCGTTCAGCTTTCCAGAGTAAACGCAGATCTGTCTCCAAACCGAAAGTGATACCATTTAGCCTTGCTTAAAGCTTTAGCACTGTACATTAAAACTGTCTATTTATATTGAGTTAAACATTTATCCTTTTCGCTGcaccattttataatttattagtcattttctttcttaaCAGGGTGAATGCACGCAAATGCTCATATATTGTTTACTCTCATGTCTGTCTAACCTGGAGGTAATCGTGGATGTCAGTGATTTCATTCCAGTCTCTAGTTTAATTGCACTGTAGGATGTGCAACCTTGATGCTCCAAACACAAGGGAACATGATGCATATGTGACATGAAACCACACCAGCTCCTCTAATACTGTAGGTTTACTTGTGTCTCAGTTCTCTGTTCTTATTCCtttctaaatgtataataacagGTCTagtaaacaatacattttattgaaacTTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 18262 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 18262 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 35798 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 98622 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 127737 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 310116 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 331709 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 335350 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 337107 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 337107 11697948 ~ 11699511 (-) False G35599
XM_043238871.1 mRNA downstream 3532 11337866 ~ 11345096 (-) True agtr2
XM_043238873.1 mRNA downstream 3615 11337866 ~ 11345013 (-) False agtr2
XM_043238872.1 mRNA downstream 3630 11337866 ~ 11344998 (-) False agtr2
XM_043238869.1 mRNA downstream 12527 11330989 ~ 11336101 (-) True si:dkey-125i10.3
XM_043239781.1 mRNA downstream 139187 11204478 ~ 11209441 (-) False kat5a
XM_043238874.1 mRNA upstream 4237 11365078 ~ 11368614 (-) False cfap73
XM_043238875.1 mRNA upstream 4237 11365078 ~ 11368597 (-) True cfap73
XM_043238695.1 mRNA upstream 12961 11373802 ~ 11381783 (-) False tbx5b
XM_043238694.1 mRNA upstream 12961 11373802 ~ 11381783 (-) True tbx5b
XM_043239970.1 mRNA upstream 21839 11382680 ~ 11388895 (-) True prps1a
TU52116 other downstream 422465 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 474564 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 886919 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 1013286 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1946005 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 59114 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 102990 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 222939 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 440473 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 804569 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile